Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g07317 ATGGCAACCCTCAAACAAGTTTCAATCCTGTTACTTCCCCTGTTGCTCATTTCCCTGTTCAAGTCCTCCCATGCTGGTGGGATTGCTGTCTATTGGGGCCAAAATGGCAATGAAGGCTCATTAGCAGATGCTTGCAACACTGGCAATTACCAATTTGTGAACATAGCTTTCTTGTCCACTTTTGGCAATGGCCAAACCCCACAACTAAACCTTGCTGGCCATTGTGATCCCAGCACCAATGGCTGCACCAAGTTTAGTAGTGAAATCAAGACTTGCCAAGACAAAGGCATCAAAGTGCTACTTTCCCTTGGAGGTGCTTCTGGAAGCTACTCTCTTAACTCAGCTGATGAAGCCACACAACTTGCAAACTACCTCTGGAACAACTTCCTTGGAGGACAATCAAATTCACGCCCATTAGGTGATGCTGTTTTGGATGGCATTGATTTTGACATTGAGGCTGGTGGAGGCCAACATTGGGATGAACTTGCCAGAGCACTTGATGGATTCAGCCAACAGAAAAAGGTGTACTTGGCTGCAGCACCACAATGTCCAATCCCAGATGCTCATTTGGACTCAGCTATTAAAACTGGCCTATTTGATTATGTGTGGGTTCAGTTCTACAACAACCCTCCATGCCAATATTCTAGTGGAAACACTAACAATATTATTAACTCATGGAACCAATGGACTTCAAGTCAAGCTAAACAAGTATTTTTGGGGGTACCAGCATCTCAGGCAGCTGCTGGCAGTGGTTTTATTCCTTCTGATGTGCTAATCTCTCAGATTCTTCCTGCTATCAAGAGTTCTCCTAAATATGGTGGAGTCATGCTTTGGGATAGATTCAATGACCTCCAAAACAAATACAGTGATGCCATTAAGGGAAGTGTCTAA 891 0.4422 MATLKQVSILLLPLLLISLFKSSHAGGIAVYWGQNGNEGSLADACNTGNYQFVNIAFLSTFGNGQTPQLNLAGHCDPSTNGCTKFSSEIKTCQDKGIKVLLSLGGASGSYSLNSADEATQLANYLWNNFLGGQSNSRPLGDAVLDGIDFDIEAGGGQHWDELARALDGFSQQKKVYLAAAPQCPIPDAHLDSAIKTGLFDYVWVQFYNNPPCQYSSGNTNNIINSWNQWTSSQAKQVFLGVPASQAAAGSGFIPSDVLISQILPAIKSSPKYGGVMLWDRFNDLQNKYSDAIKGSV. 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g07317 296 ProSiteProfiles Glycosyl hydrolases family 18 (GH18) domain profile. 26 296 IPR001223 GO:0005975
Seca8g07317 296 Pfam Glycosyl hydrolases family 18 28 249 IPR001223 GO:0005975
Seca8g07317 296 FunFam Acidic endochitinase SE2 26 296 - -
Seca8g07317 296 SUPERFAMILY (Trans)glycosidases 23 291 IPR017853 -
Seca8g07317 296 ProSitePatterns Glycosyl hydrolases family 18 (GH18) active site signature. 144 152 IPR001579 GO:0004553|GO:0005975
Seca8g07317 296 PANTHER ENDOCHITINASE 10 293 - -
Seca8g07317 296 CDD GH18_hevamine_XipI_class_III 26 294 IPR045321 -
Seca8g07317 296 Gene3D Glycosidases 26 296 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g07317 Seca-Chr8 169818889 169819779 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g07317 3 296 Glycoside Hydrolase AT5G24090 62.081 5.01e-136 385
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g07317 K01183 - gmx:100783329 544.273
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g07317 8 169818889 169819779 Seca8g07317 8 169818889 169819779 ECH
Seca10g03743 10 74303614 74307574 Seca8g07317 8 169818889 169819779 PCT