Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g06705 ATGAAGAGGCTACCTGCAAGAGCTTTTGTTCATTTTGCCCCAACACCCACAATTGATATTGATGTTTGTTCTAGTTTTTGTAGTGACTTCGAAGGTTATATGGTTGCAATGTCTGGGTTTCAATTGCGTCAATCCCTGTCAAGATCAATTCTTGAAAAGGATTTTTGTAGTGAATATAGATTGGTGATTAAGCTGTGGCATGTTGGTGGAGACATTGTTTTCTTGTTTCTGAAAATGGGTCTAGAGATCTTTTGGTCAACATTTGTAACTGTGCTTTTACTAATAGCATTAAGCACTGCTCTGGAAAGCAGTGGAGAAGATGATCATGGACCATGTAAACAGAAGGCATTGGATCCTAGGCCTCACAGCGTGTCAATATTGGAGTTTGGGGCTGTTGGAGATGGAAAAACATTGAACACAGTTGCATTCCAAAATGCAATTTTTTATGCCAAGTCATTTGCTGACAAAGGTGGTGCTCAACTATATGTTCCATCTGGCAGATGGCTTACTGGAAGTTTTAACCTTACCAGCCACCTCACTCTCTTCCTTGAAAGAGGCGCAACCATTATTGCATCACAGGATTATGCACATTGGACTGTAGTGGATTCCCTACCTTCCTATGGTCGAGGAATTGATGTTCCAGGTGGGAGATATATCAGCTTGATTTATGGAAAGAACTTAAGTGATGTGGTGATTACAGGCAGGGATATTCTTCCATTACAATATTTTCTTATTTGA 738 0.4011 MKRLPARAFVHFAPTPTIDIDVCSSFCSDFEGYMVAMSGFQLRQSLSRSILEKDFCSEYRLVIKLWHVGGDIVFLFLKMGLEIFWSTFVTVLLLIALSTALESSGEDDHGPCKQKALDPRPHSVSILEFGAVGDGKTLNTVAFQNAIFYAKSFADKGGAQLYVPSGRWLTGSFNLTSHLTLFLERGATIIASQDYAHWTVVDSLPSYGRGIDVPGGRYISLIYGKNLSDVVITGRDILPLQYFLI. 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g06705 245 SUPERFAMILY Pectin lyase-like 116 236 IPR011050 -
Seca8g06705 245 Gene3D - 119 241 IPR012334 -
Seca8g06705 245 PANTHER PECTIN LYASE-RELATED 92 235 - -
Seca8g06705 245 Pfam Pectate lyase superfamily protein 124 182 IPR024535 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g06705 Seca-Chr8 161751160 161753525 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g06705 77 236 Glycoside Hydrolase AT3G16850 67.702 1.84e-68 216
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g06705 - - gmx:100801823 270.011
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g06705 8 161751160 161753525 Seca8g06705 8 161751160 161753525 ECH
Seca8g06705 8 161751160 161753525 Seca8g06704 8 161748517 161751104 PCT