Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g06704 ATGTATTTGTTAAATGCATCAGGTGATAATGGAACTATTGATGGCCAGGGTTCTGTCTGGTGGGACCTGATCAGTACTCATTCCTTAAACTACAGCAGACCACATATCATAGAACTTATTGGTTCTGATAATATCATCATCTCAAATTTGACAATTTTAAACTCTCCTGCTTGGGGCATCCATCCAGTATATTGCAGCAACGTTCAAATTCAGAACATAACAGCTCAAGCACCAGCTGAATCCCCTTACACAAGTGGTATAGTTCCAGATTCTTCTGAGTTTGTTTGCATTGACAATAGCAATATTAGCACTGGTCATGATGCAATAGTGCTGAAGAGCGGTTGGGATCAATATGGAGTAGCCTATGGCAAACCAACCTCAACTGTCCACATCAGGGGTGTTCACCTACAATCATCATCAGGTGCTGGCTTAGCATTTGGAAGTGAGATGTCTGGAGGCATATCCAACATTATTGCAGAGCAGCTTCATATTATAAACTCTACAATTGGCATTGAACTGAAGACAACTAGTGGTAGAGGTGGCTATATCAAAGACATCTTCATTTCTGATGCAGAATTGGAAAATACGTACTTGGGTATCAGTGTGACAGGATACTATGGTTTCCATCCAGATGACAAGTATGATCCTAGTGCAGTTCCGGTTGTTGGTAGAATTACTTTTAAGAATGTGATTGGTGAAAGTATTACTATTGCTGGGAATTTTTCAGGAATAGTTGATTCGCCGTTCACATCTATCTGTCTTTCAAATGTGACTCTTTCTGTCAGTTCTGAGTCATCACCTTCATGGTTTTGTTCCAATGTAAAGGGTTTCTCTGAGGAGGTGTTTCCTGAGCCATGTCCTGATCTGCAGAGTTCAAACTTTTCCTCTTGCTTTTCTCACCAACATCCACAATCTAGTTATGTCTCAAGCGCATGA 936 0.406 MYLLNASGDNGTIDGQGSVWWDLISTHSLNYSRPHIIELIGSDNIIISNLTILNSPAWGIHPVYCSNVQIQNITAQAPAESPYTSGIVPDSSEFVCIDNSNISTGHDAIVLKSGWDQYGVAYGKPTSTVHIRGVHLQSSSGAGLAFGSEMSGGISNIIAEQLHIINSTIGIELKTTSGRGGYIKDIFISDAELENTYLGISVTGYYGFHPDDKYDPSAVPVVGRITFKNVIGESITIAGNFSGIVDSPFTSICLSNVTLSVSSESSPSWFCSNVKGFSEEVFPEPCPDLQSSNFSSCFSHQHPQSSYVSSA. 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g06704 311 SMART pbh1 183 204 IPR006626 -
Seca8g06704 311 SMART pbh1 92 113 IPR006626 -
Seca8g06704 311 SMART pbh1 42 64 IPR006626 -
Seca8g06704 311 SMART pbh1 154 175 IPR006626 -
Seca8g06704 311 SMART pbh1 126 148 IPR006626 -
Seca8g06704 311 SMART pbh1 65 91 IPR006626 -
Seca8g06704 311 Pfam Glycosyl hydrolases family 28 7 275 IPR000743 GO:0004650|GO:0005975
Seca8g06704 311 SUPERFAMILY Pectin lyase-like 8 290 IPR011050 -
Seca8g06704 311 Gene3D - 4 280 IPR012334 -
Seca8g06704 311 PANTHER PECTIN LYASE-RELATED 7 303 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g06704 Seca-Chr8 161748517 161751104 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g06704 7 299 Glycoside Hydrolase AT3G16850 54.608 1.87e-115 339
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g06704 - - aprc:113872494 518.85
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g06704 8 161748517 161751104 Seca8g06704 8 161748517 161751104 ECH
Seca8g06705 8 161751160 161753525 Seca8g06704 8 161748517 161751104 PCT