Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g06678 ATGGCTGTCACCACTCCCTATCTCAATGCTGCAGAAAAGAAGCACTGGTGGCTCACCAACCGTAAGCTTGTTGAGAAATACATCAAAGACGCTCGCAGTCTCATTGCGACGCAAGAACAGAGCGAGATCGTTTCTGCTCTGAATCTTCTAGACGCGGCTCTGGCTATTTCTCCAAGGCTAGAGCAAGCCCTTGAGCTGAAAGCGAGGGCTCTGCTTTATCTGCGAAGGTTCAAAGACGTAGCTGATATGCTTCAGGACTACATTCCGAGCCTGAAAATGTCGAATGATGACTCAAGCTCTGTTTCTTCTTCGGATAGCAGTTCATCTCAGCAGCTTTCAAGGGAAGGCGTGAAGCTTCTCTCTTCATCGGATTCGGATCAGAGTTTTAAGTGCTTCTCTGTTTCTGACTTGAAGAAGAAAGTAATGGCAGGACTGAGTAAAAGTTGCGACAAAGAAGGGCATTGGAGATACTTGGTTTTGGGGAAAGCATGCTGCCACCTAGGCCTAATGGAGGATGCAATGGTTCTTCTCCAAACCGGAAAACGCCTAGCCAGCGCGGCGTTCCGCCGCGAAAGCGTGTGTTGGTCGGAAGACAGCTTCTCACTGTGGAACACACCTTTCTCCGGCGACCCCACCACCACAAAACCACCGTCCCCACCCCACACCCCTCTCACAGAATCCGAAACAGTCACCCAACTCCTCGCACACATCAAGTTCCTCCTCCGGCGACGCGCCGCCGCAATGGCGGCCCTTGACGCCGGACTCCACACGGAAGCCATCCGCCACTTCTCCAAGATCGTCGACGGCCGCCGCGGCGCCCCACAAGGGTTCCTCGCCGAGTGCTACATGCACAGAGCCACTGCTTATCGTTCCGCTGGTCGAATCGCAGAATCAATCGCCGATTGTAACAGAACACTTACATTAGACCCAACTTGTATCCAAGCTCTTGAAGCCAGAGCCTCTCTTTTGGAAACAATTCGTTGTTACCCTGATTGTTTGCACGATCTTGAACACTTGAAACTCTTGTATAACTCCATCTTGCGTGATAGAAAACTTGCTGGCCCTGCTTGGAAGCGCCACAATGTGCGCTATGGTGAAATTCCAGGGAAACTCTGTGCCCTCACTGCGAAGATTCAACAACTGAAACAAAGAGTGGCTTCTGGTGAAACTGGTAATGTTGATTACCATGCTTTGATTGGGTTGAGAAGAGGGTGTGGTAGATCAGAGTTACAGAGAGCTCATCTTTTGCTCTGTTTGAAGCACAAGCCTGATAAAGCTATTAGCTTTATCGATCGATGTGAGCTTGCGGATGAACGTGATCTTGAATCGGTTAAGGATAGAGCGAGAATGTCAGCATTGATGTTGTATAGGTTGCTTCAGAAGGGTTATACAAATGTGATGGCTACTATTATGGAAGAAGAGGCTGCTGAGAAACAGAGGAAGAAGGCTTTGCAAAATGCAGTGGTTCAGGTTCAGGTTCAGGTTCAGCAGCAACAGACAAATGTTGATGAAGGGAAGAAGCAAAGTGAGAATTTGGGAGGTAAGTGTGCGATGTCTTCACCGTCGATTGTGAATCCGTCGGTGTTTCAAGGAGTGTTTTGCCGTGATCTGTCTGTGGTTGGGAACTTGCTTTCACAAGTGAGGTTCAATAATCGTTCAATTCCGGTGAAGTATGAAGCATTGAGCTGCTGA 1692 0.4905 MAVTTPYLNAAEKKHWWLTNRKLVEKYIKDARSLIATQEQSEIVSALNLLDAALAISPRLEQALELKARALLYLRRFKDVADMLQDYIPSLKMSNDDSSSVSSSDSSSSQQLSREGVKLLSSSDSDQSFKCFSVSDLKKKVMAGLSKSCDKEGHWRYLVLGKACCHLGLMEDAMVLLQTGKRLASAAFRRESVCWSEDSFSLWNTPFSGDPTTTKPPSPPHTPLTESETVTQLLAHIKFLLRRRAAAMAALDAGLHTEAIRHFSKIVDGRRGAPQGFLAECYMHRATAYRSAGRIAESIADCNRTLTLDPTCIQALEARASLLETIRCYPDCLHDLEHLKLLYNSILRDRKLAGPAWKRHNVRYGEIPGKLCALTAKIQQLKQRVASGETGNVDYHALIGLRRGCGRSELQRAHLLLCLKHKPDKAISFIDRCELADERDLESVKDRARMSALMLYRLLQKGYTNVMATIMEEEAAEKQRKKALQNAVVQVQVQVQQQQTNVDEGKKQSENLGGKCAMSSPSIVNPSVFQGVFCRDLSVVGNLLSQVRFNNRSIPVKYEALSC. 564
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g06678 563 Gene3D Tetratricopeptide repeat domain 11 338 IPR011990 GO:0005515
Seca8g06678 563 Coils Coil 481 501 - -
Seca8g06678 563 SMART tpr_5 279 312 IPR019734 GO:0005515
Seca8g06678 563 SMART tpr_5 154 187 IPR019734 GO:0005515
Seca8g06678 563 SUPERFAMILY TPR-like 245 342 IPR011990 GO:0005515
Seca8g06678 563 MobiDBLite consensus disorder prediction 206 225 - -
Seca8g06678 563 PANTHER OS01G0273500 PROTEIN 9 563 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g06678 Seca-Chr8 161402452 161405690 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g06678 - - gmx:106797171 820.461
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g06678 8 161402452 161405690 Seca8g06678 8 161402452 161405690 ECH
Seca8g06678 8 161402452 161405690 Seca2g05103 2 137492625 137495188 PCT