LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca8g06677	ATGGATTCTCATTCTATCTTCTCACCTCTCATCACCATATTTTTCCTTCTCTTTTTGAGTGGCGAGGCACGTGAGCCTTTCGCTTGTGACCCGAAGAACACCGCCACAAATAACTTGGCATTTTGCAAGGCGACGCTGCCAATAGGGGCAAGGGTGAAGGACCTGATTGGAAGGTTGACAGTGGAAGAAAAGGTGAAGCTGCTAGTGAACAATGCAGGGGCGGTTCCAAGGCTTGGTATCAAAGGGTATGAGTGGTGGTCAGAGGCACTTCATGGGGTTTCAAATGTGGGTCCAGGAACCAAGTTTGGTGGCCAATTCCCTGCCGCCACTAGCTTCCCTCAAGTCATCACTACCGCTGCTTCATTCAATGCCTCCTTGTGGGAACAAATCGGACGGGTTGCCTCAGACGAAGCAAGGGCAATGTACAATGGAGGAATGGCTGGCCTCACATACTGGAGCCCAAATGTTAACATTTTTAGGGACCCACGCTGGGGCCGTGGACAGGAAACTCCCGGTGAGGACCCAATGCTAGCCGGTAGATATGCAGCCAGTTATGTCAGGGGACTACAGGGAACCGACGGTAACCGGTTGAGAGTGGCTGCTTCTTGCAAACACTTTACGGCTTATGATCTTGATAATTGGAACGGTGTGGATCGCTTTCACTTTAATGCAAAGGTTAGCAAGCAGGACATAGAAGACACATTCAATGTGCCATTCAGGATGTGCGTGAAGGAAGGTAAAGTGGCAAGTGTAATGTGTTCTTACAATCAAGTGAATGGTGTCCCTACCTGTGCTGACCCCAACCTCCTAAAGAGAACAGTTCGTGGCCAATGGCGTCTTGATGGGTACATTGTATCAGATTGTGACTCCGTTGGGGTATTTTACACTAGCCAACATTACACATCAACCCCAGAAGAAGCTGCTGCTGATGCCATTAAAGCAGGACAAAATGGGCTTATATTTGCTCACATTACAGGTTTGGATTTGGATTGTGGGCCTTTCTTAGGATTGCATACACAAAATGCCGTCAAAAAAGGCTTGTTAAGCGAATCTGATGTGAACGGTGCTTTAACAAACACATTGACAGTCCAAATGAGGTTAGGGATGTTTGATGGTGAACCATCATCTCACCCATATGGGAACCTTGGTCCAAGCGATGTGTGCACTCCATCTCACCAAGAACTTGCCCTTGAAGCTGCAAGACAAGGGATCGTGCTGCTTAAGAACAATGGGCCTTCTTTGCCTCTCTCCACGCGGCGTCACTACACTGTAGCTGTCATTGGGCCCAATTCCAATGCCACTGTCACAATGATCGGCAACTATGCTGGTATTGCTTGTGGATACACAAGCCCATTACATGGAATAGGGAGATATGCCAGGACTGTTCATGAGCTTGGTTGTGCAAACGTGGCTTGCACTGATGACAAGCAATTTGGGTCGGCTATAAATGCAGCCCGTCAAGCAGATGCAACGGTTCTAGTGATGGGTTTAGACCAGTCCATTGAAGCTGAAACCGTGGACCGGGCTGGGTTGCTTCTTCCTGGGCGTCAACAAGACCTTGTATCAAAGGTAGCAGCTGCCTCCAAAGGCCCAACTATTTTGGTCTTAATGTCTGGTGGGCCTGTAGATATCTCTTTTGCAAAGAATGACCCTCGAATCGTAGGCATCTTATGGGCTGGGTATCCCGGTCAAGCTGGTGGTGCTGCTATTGCAGATATCTTGTTTGGAACTGCTAATCCAGGAGCAAAGTTACCTATGACATGGTACCCACAAGGGTACCTTCAAAACTTGCCAATGACAAATATGGCAATGAGATCAAGCCAATCCACAGGGTACCCTGGAAGAACTTACCGATTTTACAATGGCCCAGTGGTGTATCCATTTGGTTATGGATTGTCTTACACACATTTTGTTCATACACTAGCTAGTGCCCCCAAATTGGTCTCAGTTCCTGTGGATGGACACCGTCATGGAAATAGCACAAACATTTCAAACAAGGCAATTAGAGTGACACATGCAAGATGTGGCAAGCTTTCGATTAGCCTTGAGGTGGATGTTAAAAATGTTGGCTCCAAAGATGGCACTCACACTTTGTTAGTGTTCTCAAAACCACCTGCAGGTAATGGACATTGGGCACCACACAAGCAACTAGTGGCCTTTGAGAAGGTTCATGTTCCTGCTAAGGCTCAGCAGCGAGTGCGAGTTAAAATTCACGTTTGCAAGCTCCTAAGTGTGGTTGATAGGTCTGGGACTAGGAGAATTCCAATGGGGGAACACAGTCTTCATATTGGTGATGTTAAACACTCTCTATCACTTCAAGCACAAACACTTGGGATTATCAAGTCATGA	2349	0.4734	MDSHSIFSPLITIFFLLFLSGEAREPFACDPKNTATNNLAFCKATLPIGARVKDLIGRLTVEEKVKLLVNNAGAVPRLGIKGYEWWSEALHGVSNVGPGTKFGGQFPAATSFPQVITTAASFNASLWEQIGRVASDEARAMYNGGMAGLTYWSPNVNIFRDPRWGRGQETPGEDPMLAGRYAASYVRGLQGTDGNRLRVAASCKHFTAYDLDNWNGVDRFHFNAKVSKQDIEDTFNVPFRMCVKEGKVASVMCSYNQVNGVPTCADPNLLKRTVRGQWRLDGYIVSDCDSVGVFYTSQHYTSTPEEAAADAIKAGQNGLIFAHITGLDLDCGPFLGLHTQNAVKKGLLSESDVNGALTNTLTVQMRLGMFDGEPSSHPYGNLGPSDVCTPSHQELALEAARQGIVLLKNNGPSLPLSTRRHYTVAVIGPNSNATVTMIGNYAGIACGYTSPLHGIGRYARTVHELGCANVACTDDKQFGSAINAARQADATVLVMGLDQSIEAETVDRAGLLLPGRQQDLVSKVAAASKGPTILVLMSGGPVDISFAKNDPRIVGILWAGYPGQAGGAAIADILFGTANPGAKLPMTWYPQGYLQNLPMTNMAMRSSQSTGYPGRTYRFYNGPVVYPFGYGLSYTHFVHTLASAPKLVSVPVDGHRHGNSTNISNKAIRVTHARCGKLSISLEVDVKNVGSKDGTHTLLVFSKPPAGNGHWAPHKQLVAFEKVHVPAKAQQRVRVKIHVCKLLSVVDRSGTRRIPMGEHSLHIGDVKHSLSLQAQTLGIIKS.	783

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca8g06677	782	Pfam	Glycosyl hydrolase family 3 N terminal domain	105	357	IPR001764	GO:0004553\|GO:0005975
	Seca8g06677	782	FunFam	probable beta-D-xylosidase 7	51	376	-	-
	Seca8g06677	782	PANTHER	SUGAR HYDROLASE-RELATED	20	769	IPR044993	GO:0009044\|GO:0045493
	Seca8g06677	782	Pfam	Fibronectin type III-like domain	698	765	IPR026891	-
	Seca8g06677	782	Pfam	Glycosyl hydrolase family 3 C-terminal domain	404	634	IPR002772	GO:0004553\|GO:0005975
	Seca8g06677	782	FunFam	probable beta-D-xylosidase 2	389	635	-	-
	Seca8g06677	782	Gene3D	-	51	378	IPR036962	GO:0004553\|GO:0005975
	Seca8g06677	782	PRINTS	Glycosyl hydrolase family 3 signature	112	131	IPR001764	GO:0004553\|GO:0005975
	Seca8g06677	782	PRINTS	Glycosyl hydrolase family 3 signature	199	215	IPR001764	GO:0004553\|GO:0005975
	Seca8g06677	782	PRINTS	Glycosyl hydrolase family 3 signature	273	291	IPR001764	GO:0004553\|GO:0005975
	Seca8g06677	782	Gene3D	-	390	635	IPR036881	GO:0004553\|GO:0005975
	Seca8g06677	782	SMART	Fn3_like_2	696	767	IPR026891	-
	Seca8g06677	782	SUPERFAMILY	Beta-D-glucan exohydrolase, C-terminal domain	404	637	IPR036881	GO:0004553\|GO:0005975
	Seca8g06677	782	SUPERFAMILY	(Trans)glycosidases	40	403	IPR017853	-
	Seca8g06677	782	Gene3D	Immunoglobulins	658	780	IPR013783	-
	Seca8g06677	782	FunFam	Probable beta-D-xylosidase 2	659	779	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca8g06677	Seca-Chr8	161380559	161385588	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca8g06677	1	782	Glycoside Hydrolase	AT1G02640	72.102	0.0	1177

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca8g06677	-		-	gmx:100798630	1420.22

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Seca8g06677	8	161380559	161385588	Seca8g06677	8	161380559	161385588	ECH
	Seca8g06677	8	161380559	161385588	Seca2g05104	2	137512003	137516528	PCT