LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca2g05104	ATGGCTTCCCCATCCTCACCCCTCATTACCACACTCTTCTTCCTCTTCCTCCTTCTTGGGATCACCGGCGAGGCACGTGACCCGTTCGCATGTGACCCAAAAGATGGCACCACAAAGAACTTGCCATTTTGTAAAGTGACATTATCGATACCAGAGAGGGTAAAGGACCTCATTGGAAGGTTAACACTGCAAGAGAAAGTTAACCTTCTAGTCAATAATGCCGCGGCGGTTCCACGCCTTGGAATCAAAGGCTATGAGTGGTGGTCTGAGGCACTTCATGGCGTTTCCAATGTGGGCCCTGGAACCAAGTTTGGTGGCCCCTTCCCTGGCGCTACTAGCTTCCCTCAAGTCATCACCACCGCTGCTTCCTTCAATGCATCTTTGTGGGAGGCAATCGGACGGGTTGTCTCAGACGAAGCAAGGGCAATGTACAACGGAGGAACAGCTGGGCTAACATATTGGAGTCCAAATGTGAACATTTTCAGAGACCCAAGGTGGGGCCGTGGACAGGAAACTCCCGGTGAGGACCCTGTGCTAGCCGGTAGATATGCTGCTAGTTACGTGAGGGGGCTACAGGGAACAGACGGTAACCGGTTGAAGGTGGCTGCTTGTTGCAAACACTTCACAGCTTATGACCTTGATAATTGGAACGGCGTCGACCGCTTTCACTTTAACGCACAGGTGAGCAAGCAGGACATAGAGGACACATTTGATGTTCCATTCAGGATGTGTGTGAAGGAAGGCAAAGTAGCCAGTGTCATGTGTTCTTACAATCAGGTCAATGGTGTCCCTACCTGTGCGGACCCCAACCTCCTAAAGAAAACAGTTCGTGGACAATGGCGTCTTGACGGGTACATTGTCTCAGACTGTGACTCAGTGGGGGTGTTTTACAATAGCCAACATTATACATCAACGCCAGAAGAAGCTGCTGCAGATGCCATTAAAGCAGGCCAAATGAGTTTTTTTTTTAATCATGTTACAGGTTTGGATTTAGATTGTGGGCCTTTCCTAGGATCTCACACGCAGGATGCAGTAAAAAAAGGTTTGTTAAGCGAAACAGATGTGAATGGTGCTTTGATGAATACACTGACAGTCCAAATGAGGTTAGGAATGTTTGATGGAGAGCCATCAGCTCAGGCTTATGGCAAGTTGGGCCCAAAAGATGTGTGCAAACCAGCTCATCAAGAACTCGCCCTTGAAGCTGCAAGACAAGGAATTGTGCTTCTTAAAAACAAGGGTCCCATTTTGCCTCTCTCACCACAGACTCACCGCACAATAGCTGTCATTGGGCCCAATTCTAATGTCACTGTTACAATGATTGGAAACTATGCAGGTATTGCTTGTGGATATACTAGTCCATTACAAGGAATAGGAAGATATGCCCGGGCTATTCATCAGCTAGGTTGTGGAAATGTAGCTTGTACTGATGATAAGAAATTTGGGCCTGCTATAGATGCAGCCCGGAAGGCAGATGCAACGGTTCTAGTAATGGGCTTGGACCAGTCCATTGAAGCTGAAACAGTGGACAGGGTTGGGCTTTTTTTGCCTGGGCATCAACAAGACCTTGTTTCAAGGGTAGCTGCTGCCTCAAAGGGACCAACTATTTTGGTCTTGATGTCTGGTGGGCCATTGGATGTTACTTTTGCAAAGAATGATCCTAGAATTGCTGGAATCTTGTGGGCTGGTTATCCAGGCCAAGCTGGTGGTGCTGCCATTGCAGATATTCTATTTGGAACTGCTAACCCAGGAGGCAAGTTGCCTGTGACATGGTACCCACAAGGGTACCTAACAAACTTGCCAATGACAAATATGGCAATGAGACCAAGCCAATCAGCAGGGTACCCTGGAAGAACATACAGATTCTACAAAGGTCCAGTGGTGTATGAATTTGGACATGGATTAACATACACCCACTTTGTTCATACATTAGCTAGTGCCCCTAAAGTGGTGTCAGTTCCAGTGCATGGTCACCGCCATGCTAATACCACCAACATTTCAAACAAGGCAATTAGAGTGACACATGCATTATGTGGCAAGCTCTCCATAACTCTTCATGTAGATGTTAAGAATGTGGGGTCCAGAGATGGCACTCACACATTGTTAGTGTTCTCTGCTCCTCCTGATGGTGGTGCCCATTGGGCACCACAGAAGCAGTTAGTGGCTTTTGAGAAAGTGCATGTTCCTGCCAAATCTCAGCAGCGAATTCAAGTTAATATCCATGTCTGCAAGCTCTTGAGTGTGGTGGACAGGTCTGGGATTAGGAGAATCCCAATGGGGGTACACAGTCTTCATATTGGTGATGTTAAACACTCTGTATCACTTCAAGCAGAAGCACTTGGGATTATCAAGTCCTGA	2355	0.473	MASPSSPLITTLFFLFLLLGITGEARDPFACDPKDGTTKNLPFCKVTLSIPERVKDLIGRLTLQEKVNLLVNNAAAVPRLGIKGYEWWSEALHGVSNVGPGTKFGGPFPGATSFPQVITTAASFNASLWEAIGRVVSDEARAMYNGGTAGLTYWSPNVNIFRDPRWGRGQETPGEDPVLAGRYAASYVRGLQGTDGNRLKVAACCKHFTAYDLDNWNGVDRFHFNAQVSKQDIEDTFDVPFRMCVKEGKVASVMCSYNQVNGVPTCADPNLLKKTVRGQWRLDGYIVSDCDSVGVFYNSQHYTSTPEEAAADAIKAGQMSFFFNHVTGLDLDCGPFLGSHTQDAVKKGLLSETDVNGALMNTLTVQMRLGMFDGEPSAQAYGKLGPKDVCKPAHQELALEAARQGIVLLKNKGPILPLSPQTHRTIAVIGPNSNVTVTMIGNYAGIACGYTSPLQGIGRYARAIHQLGCGNVACTDDKKFGPAIDAARKADATVLVMGLDQSIEAETVDRVGLFLPGHQQDLVSRVAAASKGPTILVLMSGGPLDVTFAKNDPRIAGILWAGYPGQAGGAAIADILFGTANPGGKLPVTWYPQGYLTNLPMTNMAMRPSQSAGYPGRTYRFYKGPVVYEFGHGLTYTHFVHTLASAPKVVSVPVHGHRHANTTNISNKAIRVTHALCGKLSITLHVDVKNVGSRDGTHTLLVFSAPPDGGAHWAPQKQLVAFEKVHVPAKSQQRIQVNIHVCKLLSVVDRSGIRRIPMGVHSLHIGDVKHSVSLQAEALGIIKS.	785

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca2g05104	784	PRINTS	Glycosyl hydrolase family 3 signature	114	133	IPR001764	GO:0004553\|GO:0005975
	Seca2g05104	784	PRINTS	Glycosyl hydrolase family 3 signature	275	293	IPR001764	GO:0004553\|GO:0005975
	Seca2g05104	784	PRINTS	Glycosyl hydrolase family 3 signature	201	217	IPR001764	GO:0004553\|GO:0005975
	Seca2g05104	784	FunFam	probable beta-D-xylosidase 2	391	637	-	-
	Seca2g05104	784	Gene3D	Immunoglobulins	659	780	IPR013783	-
	Seca2g05104	784	Gene3D	-	392	637	IPR036881	GO:0004553\|GO:0005975
	Seca2g05104	784	Pfam	Glycosyl hydrolase family 3 C-terminal domain	406	636	IPR002772	GO:0004553\|GO:0005975
	Seca2g05104	784	FunFam	probable beta-D-xylosidase 7	53	378	-	-
	Seca2g05104	784	FunFam	Probable beta-D-xylosidase 2	661	781	-	-
	Seca2g05104	784	SUPERFAMILY	(Trans)glycosidases	41	405	IPR017853	-
	Seca2g05104	784	Pfam	Fibronectin type III-like domain	699	767	IPR026891	-
	Seca2g05104	784	SUPERFAMILY	Beta-D-glucan exohydrolase, C-terminal domain	406	639	IPR036881	GO:0004553\|GO:0005975
	Seca2g05104	784	SMART	Fn3_like_2	698	769	IPR026891	-
	Seca2g05104	784	Pfam	Glycosyl hydrolase family 3 N terminal domain	110	359	IPR001764	GO:0004553\|GO:0005975
	Seca2g05104	784	Gene3D	-	53	381	IPR036962	GO:0004553\|GO:0005975
	Seca2g05104	784	PANTHER	SUGAR HYDROLASE-RELATED	25	772	IPR044993	GO:0009044\|GO:0045493

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca2g05104	Seca-Chr2	137512003	137516528	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca2g05104	8	784	Glycoside Hydrolase	AT1G02640	73.616	0.0	1192

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca2g05104	-		-	gmx:100789316	1349.34

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Seca2g05104	2	137512003	137516528	Seca2g05104	2	137512003	137516528	ECH
	Seca8g06677	8	161380559	161385588	Seca2g05104	2	137512003	137516528	PCT