Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g06588 ATGAAGAGACTTTCAACTCTGGTGGATGTGTTCCTGGTACTTGCATTGTTCAGTTGTAGCCCATGGACTGTGTGTAGCAGCTCACGCTGCAATCAGATGAACATGAAGGAAGTTAGACCACACAGTGTCAGTATTACCGAATTTGGAGCAGTTGGCGATGGGATCACCCTCAATACCAAGGCATTTCAGAATGCCATCTTCTACCTAAATTCATTTGCAGACAAAGGTGGAGCCAAGCTTTTTGTCCCAGCTGGCCGGTGGTTAACTGGAAGTTTTGATCTCATCAGCCATCTAACTTTGTGGTTGGACAAGGATGCAGTAATTCTTGGATCAACTAACTCTGATGATTGGCCAGTTGTTGATCCTCTACCATCATATGGTCGAGGAAGGGAGTTGCCAGGTGGAAGGCATAGAAGCCTCATTTATGGGCGCAATTTGACTGATGTCATTATAACAGGTAATAATGGAACCATAGATGGTCAAGGGAATATCTGGTGGAACAAATTTCATAATAAAACACTGGATTATACACGTCCCCATTTGGTTGAGTTGATGAATTCAACGGAGGTTCTGATTTCGAATTTAACCTTCTTGAATTCACCATTTTGGACTATTCATCCTGTATATTGCAGCCATGTTACAGTTCAAAATGTCACAATCCTTGCTCCTCATACTTCACCAAATACTGATGGGATTGATCCAGGTGAGTTTTCTCCCTTAGGCTGGAAAGTCATACTCTTATGTCCAGATTCTTCAGATGATGTATGCATTGAAGACTGTTATATAAGCACTGGTGATGATCTGATTTCTATCAAAAGTGGATGGGATGAATATGGCATTTCATTTGGTCGTCCCAGTACAAACATTATCATCCACAGGCTCATTGGGAAAACAACGAGTGCAGGAATTGCTATTGGAAGTGAGATGTCTGGAGGTGTATCAGAAGTTCATGCAGAAGATATTTACATTTTTGATTCACATAGCGCAATCAGAATAAAGACTTCTCCTGGCAGAGGTGGTTATGTTAGAAATGTCTATATCTCTAACATGACCTTGACTAATGTAGATATTGCTATTAGGTTCAGTGGTTTATATGGAGAACATCCACATGACACTTATGATCCAGATGCTCTACCTGTAATAGAAAGGATTACTATCAAGGACGTGATAGGGGAAAATGTCAAACGTGCAGGCCTTATACAGGGCATAGAAGGTGACAACTTTGTCGATATCTGTCTATCAAACATCACCCTTAATGTGAGCTCAAAAATTCCATGGAACTGCTCTTATGTTAAAGGATACTCTGACATGGTTTCACCGGAAGCTTGTGAGCTTCTCAAAGAAAGAATATTTCCTGAGCATTATTCAGACTGCTACAATTTACCAAATTACTTAAAGAGTTCAAGTAATCGAAACAGAGGTGCTTGGTTGCTGTCTTGGTGA 1443 0.4068 MKRLSTLVDVFLVLALFSCSPWTVCSSSRCNQMNMKEVRPHSVSITEFGAVGDGITLNTKAFQNAIFYLNSFADKGGAKLFVPAGRWLTGSFDLISHLTLWLDKDAVILGSTNSDDWPVVDPLPSYGRGRELPGGRHRSLIYGRNLTDVIITGNNGTIDGQGNIWWNKFHNKTLDYTRPHLVELMNSTEVLISNLTFLNSPFWTIHPVYCSHVTVQNVTILAPHTSPNTDGIDPGEFSPLGWKVILLCPDSSDDVCIEDCYISTGDDLISIKSGWDEYGISFGRPSTNIIIHRLIGKTTSAGIAIGSEMSGGVSEVHAEDIYIFDSHSAIRIKTSPGRGGYVRNVYISNMTLTNVDIAIRFSGLYGEHPHDTYDPDALPVIERITIKDVIGENVKRAGLIQGIEGDNFVDICLSNITLNVSSKIPWNCSYVKGYSDMVSPEACELLKERIFPEHYSDCYNLPNYLKSSSNRNRGAWLLSW. 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g06588 480 SMART pbh1 252 284 IPR006626 -
Seca8g06588 480 SMART pbh1 286 307 IPR006626 -
Seca8g06588 480 SMART pbh1 313 334 IPR006626 -
Seca8g06588 480 SMART pbh1 210 236 IPR006626 -
Seca8g06588 480 SMART pbh1 342 363 IPR006626 -
Seca8g06588 480 Gene3D - 23 434 IPR012334 -
Seca8g06588 480 Pfam Glycosyl hydrolases family 28 138 432 IPR000743 GO:0004650|GO:0005975
Seca8g06588 480 PANTHER PECTIN LYASE-RELATED 17 457 - -
Seca8g06588 480 SUPERFAMILY Pectin lyase-like 36 447 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g06588 Seca-Chr8 160425121 160428919 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g06588 1 480 Glycoside Hydrolase AT3G62110 66.598 0.0 635
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g06588 - - lja:Lj0g3v0276749.1 863.603
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g06588 8 160425121 160428919 Seca2g05178 2 138214316 138218707 PCT