Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g05178 ATGAGGAGGAGGAGGAGACCTTCAACAGTGGTGGATGTGCTTCTGGTACTTGCATTGTTCTGTTGTAGCACATGGACGGTGTGGAGCAGCACGCTTTGCAAAAAGACAAACTTGGAGAGAGTTCGACCTCACAGTGTCAGCATTACAGAATTTGGTGCAGTTGGCGATGGGGTCACTCTCAACACAAAAGCATTTCAGAATGCCATCTTCTACCTAAATTCATTTGCAGATAAAGGTGGAGCAAAGCTTTTTGTCCCTGCTGGTAGATGGTTAACTGGTAGTTTTGATCTCATCAGCCACTTAACTTTGTGGTTGGACAAGGATGCAGTGATTCTTGGATCAACAGACTCTGATGATTGGCCAGTTGTTGATCCTCTACCCTCTTATGGGCGAGGAAGGGAGTTGCCAGGTGGAAGGCATAGGAGTCTCATTTATGGGAACAATTTGACAGATGTTATCATAACAGGTAACAATGGAACTATTGATGGTCAAGGGAGTATCTGGTGGAGCAGGTTTAGGAACAACACTCTGGATTATACACGTCCCCATTTGGTAGAATTGATGAATACAACCGGGGTTCTCATTTCAAATTTAACCTTCTTGAATTCTCCATTTTGGACTATACACCCTGTATATTGCAGCCAAGTTACAGTTAAGAATGTCACCATCCTTGCTCCTCTTGATTCACCAAACACAGATGGGATTGATCCAGATTCTTCTGATGATGTATGCATTGAAGACTGTTATATAAGCACTGGTGATGATCTGATTGCCATCAAAAGTGGGTGGGATGAGTATGGAATTGCATTTGGTCGTCCAAGCACAAACATTATCATCCACAGGCTTGTTGGGAAAACTCATACAAGTGCAGGGATTGCTATTGGGAGTGAGATGTCTGGTGGTGTATCAGAAGTTCATGCAGAAGATATTCACTTTTATGATTCATATAGTGCAATCAGAATAAAGACTTCTCCTGGAAGGGGTGGTTATGTTAGAAACATCTACATCTCTAACATGACCTTGTCTAATGTTGATATTGCTATTAGGTTCACTGGTTTATATGGGGATCATCCAGATGATGCTTATGATCCAAATGCTCTACCTGTAATAGAAAGGATTACATTCAAGGATGTGATAGGAGAAAATATCACAAGAGCAGGTCTTATAGAGGGTATAGAAGGAGATGATTTTGTCAACATATGCTTATCAAACATCACCCTAAATGTGAGCTCAAGCTTTCCATGGAACTGCTCTCATGTTAAAGGATACTCTGACATGGTTCTGCCAGAAGCTTGTGAGCCCCTCAAGGAGAGAATATTCCCTGAGCATTGTTCAGACTGTTACTATTTATCAAATCACCGACAGATTTTGGATAATAAAAAAAGAGGTGGTTGGTTTCTGTCTTGGACATTGGAGATTTTGCAGAAGTTCGAGGCAGATGCTTCTTTTGTTTGA 1455 0.4151 MRRRRRPSTVVDVLLVLALFCCSTWTVWSSTLCKKTNLERVRPHSVSITEFGAVGDGVTLNTKAFQNAIFYLNSFADKGGAKLFVPAGRWLTGSFDLISHLTLWLDKDAVILGSTDSDDWPVVDPLPSYGRGRELPGGRHRSLIYGNNLTDVIITGNNGTIDGQGSIWWSRFRNNTLDYTRPHLVELMNTTGVLISNLTFLNSPFWTIHPVYCSQVTVKNVTILAPLDSPNTDGIDPDSSDDVCIEDCYISTGDDLIAIKSGWDEYGIAFGRPSTNIIIHRLVGKTHTSAGIAIGSEMSGGVSEVHAEDIHFYDSYSAIRIKTSPGRGGYVRNIYISNMTLSNVDIAIRFTGLYGDHPDDAYDPNALPVIERITFKDVIGENITRAGLIEGIEGDDFVNICLSNITLNVSSSFPWNCSHVKGYSDMVLPEACEPLKERIFPEHCSDCYYLSNHRQILDNKKRGGWFLSWTLEILQKFEADASFV. 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g05178 484 SUPERFAMILY Pectin lyase-like 39 435 IPR011050 -
Seca2g05178 484 FunFam Glycoside hydrolase family 28 protein 31 426 - -
Seca2g05178 484 PANTHER PECTIN LYASE-RELATED 18 452 - -
Seca2g05178 484 Gene3D - 26 424 IPR012334 -
Seca2g05178 484 SMART pbh1 144 171 IPR006626 -
Seca2g05178 484 SMART pbh1 240 272 IPR006626 -
Seca2g05178 484 SMART pbh1 274 296 IPR006626 -
Seca2g05178 484 SMART pbh1 213 239 IPR006626 -
Seca2g05178 484 SMART pbh1 302 323 IPR006626 -
Seca2g05178 484 SMART pbh1 331 352 IPR006626 -
Seca2g05178 484 Pfam Glycosyl hydrolases family 28 141 421 IPR000743 GO:0004650|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g05178 Seca-Chr2 138214316 138218707 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g05178 5 469 Glycoside Hydrolase AT3G62110 69.068 0.0 658
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g05178 - - gmx:100782602 828.55
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca2g05178 2 138214316 138218707 Seca2g05178 2 138214316 138218707 ECH
Seca8g06588 8 160425121 160428919 Seca2g05178 2 138214316 138218707 PCT