Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g06585 ATGGCATTCTCATTCCCCTCAATTGGTGTCTCTCTCTCTAGCTTCTTATTTTGCTACACTGTCCTGTTTCACTCCTCATCTTTGGGAGCTGAAGCGCGTAGCTCACCCAATACACCCATTTCTTCTCTCATTAGCGAAAATCTTTTTGATTCCATTTTCCTTCACAAAGATGACAGTGCATGTCCTGCCAAAAATTTCTACACCTATGACACCTTCATTGAGGCATCCAAACGCTTCCCAGAATTTGGTACCACAGGTAGTTTAACCACGCGCCAGCGTGAGATTGCTGCTTTTCTTGCCCAAATTTCCCATGAAACCACAGGTGGATGGGCTACTGCACCTGATGGACCTTATGCTTGGGGATTGTGCTTCAAAGAAGAAGTTAATCCTCAAAATGACTACTGTGATTCCACTAACAAAGAATGGCCTTGTTATCAAGGAAAAAGTTACAATGGCAGAGGACCAATTCAACTTTCTTGGAACTACAACTATGGGCCAGCAGGGCAGGCCTTGGGATTTGATGGATTGAGAAACCCGGAAATTGTGTCAAACAATTCATTGATTGCATTTAAAACAGCTCTGTGGTTTTGGATGACAGAGCAAGAGCCAAAACCTTCTTGCCACAATGTGATGATTGGAAACTATGTGCCAACAGAAGCTGATATAGCAGCTAATCGAACTGCTGGGTATGGTTTGGTGACAAACATAATCAATGGAGGACTTGAATGTGGAATTCCTGATGATTCAAGGGTGAATGATCGGATTGGATATTTTGAAAGATATGCAAAATTGTTTAACGTGGATACGGGACCTAACTTGGATTGTGCATATCAGAGATCCTTCTAG 846 0.4255 MAFSFPSIGVSLSSFLFCYTVLFHSSSLGAEARSSPNTPISSLISENLFDSIFLHKDDSACPAKNFYTYDTFIEASKRFPEFGTTGSLTTRQREIAAFLAQISHETTGGWATAPDGPYAWGLCFKEEVNPQNDYCDSTNKEWPCYQGKSYNGRGPIQLSWNYNYGPAGQALGFDGLRNPEIVSNNSLIAFKTALWFWMTEQEPKPSCHNVMIGNYVPTEADIAANRTAGYGLVTNIINGGLECGIPDDSRVNDRIGYFERYAKLFNVDTGPNLDCAYQRSF. 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g06585 281 Gene3D Endochitinase, domain 2 126 184 - -
Seca8g06585 281 CDD chitinase_GH19 44 275 - -
Seca8g06585 281 ProSitePatterns Chitinases family 19 signature 1. 61 83 IPR000726 GO:0004568|GO:0006032|GO:0016998
Seca8g06585 281 PIRSF Endochitinase 7 281 IPR016283 GO:0004568|GO:0005975
Seca8g06585 281 FunFam Endochitinase (Chitinase) 126 184 - -
Seca8g06585 281 Gene3D - 47 281 - -
Seca8g06585 281 ProSitePatterns Chitinases family 19 signature 2. 188 198 IPR000726 GO:0004568|GO:0006032|GO:0016998
Seca8g06585 281 Pfam Chitinase class I 43 275 IPR000726 GO:0004568|GO:0006032|GO:0016998
Seca8g06585 281 SUPERFAMILY Lysozyme-like 40 281 IPR023346 -
Seca8g06585 281 PANTHER CHITINASE-RELATED 31 279 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g06585 Seca-Chr8 160368271 160369435 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g06585 15 281 Glycoside Hydrolase AT4G01700 69.663 6.33e-148 414
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g06585 - - gmx:100785397 491.115
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g06585 8 160368271 160369435 Seca2g05181 2 138260925 138262168 PCT