Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g05181 ATGACAATCTCTTTCTCTTCAACTGTTCCCTTCCTCTCCACCTTATTGTTCTGCTTCATTGCTCTTTCCTCCCCTGCATCTTTAGGAGCGGAAGCATGGCCCTCACCCATTATACCCATCTCTTCTCTCATCACCAAAAAGCTTTTTGATTCCATTTTCCTACACAAAGATGACACTGCATGCCCTGCCAAAGACTTTTACACCTACAACTCCTTCATTCATGCATCCAAATTCTTCCCTGAATTTGGTGCTACTGGTTGTTTAAGCACACGCAAGCGTGAAATTGCTGCATTCCTTGCTCAGATTTCACATGAAACCACAGGTGGATGGGCTACTGCACCTGATGGACCATATGCTTGGGGCTTATGCTTCAAGGAAGAAATTAATCCTCAAAGTAACTACTGTGATTCTACTAACAAAGAATGGCCCTGCTACCCTGGCAAAAGTTACAACGGAAGAGGACCCATTCAACTTTCTTGGAATTTCAATTATGGACCAGCAGGGAAGGCGTTGGGATTTGATGGGCTGAGGAATCCAGAGATTGTGTCGAACAATTCAGTGATTGCCTTCAAAACTGCTCTGTGGTTTTGGATGACAGAGAGAAAGCCAACACCTTCTTGCCATAATGTGATGGTTGGAAAATATGTGGCAACAGAAGCTGACATAGCAGCTAATAGAACAGCTGGTTATGGATTGGTGACTAACATAATCAATGGTGCACTTGAATGTGGAATTCCAGGGGATGCAAGAGTCAATGATCGAATTGGATTTTTTGAAAGATATGCAAAGTTGTTCAATGTGGATACTGGACCTAATTTGGATTGTGCATTTCAGAAACCCCTCTAA 846 0.4291 MTISFSSTVPFLSTLLFCFIALSSPASLGAEAWPSPIIPISSLITKKLFDSIFLHKDDTACPAKDFYTYNSFIHASKFFPEFGATGCLSTRKREIAAFLAQISHETTGGWATAPDGPYAWGLCFKEEINPQSNYCDSTNKEWPCYPGKSYNGRGPIQLSWNFNYGPAGKALGFDGLRNPEIVSNNSVIAFKTALWFWMTERKPTPSCHNVMVGKYVATEADIAANRTAGYGLVTNIINGALECGIPGDARVNDRIGFFERYAKLFNVDTGPNLDCAFQKPL. 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g05181 281 CDD chitinase_GH19 44 275 - -
Seca2g05181 281 ProSitePatterns Chitinases family 19 signature 1. 61 83 IPR000726 GO:0004568|GO:0006032|GO:0016998
Seca2g05181 281 PANTHER CHITINASE-RELATED 40 279 - -
Seca2g05181 281 Gene3D - 47 280 - -
Seca2g05181 281 PIRSF Endochitinase 21 281 IPR016283 GO:0004568|GO:0005975
Seca2g05181 281 Gene3D Endochitinase, domain 2 126 184 - -
Seca2g05181 281 FunFam Endochitinase (Chitinase) 126 184 - -
Seca2g05181 281 SUPERFAMILY Lysozyme-like 40 280 IPR023346 -
Seca2g05181 281 ProSitePatterns Chitinases family 19 signature 2. 188 198 IPR000726 GO:0004568|GO:0006032|GO:0016998
Seca2g05181 281 Pfam Chitinase class I 43 275 IPR000726 GO:0004568|GO:0006032|GO:0016998
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g05181 Seca-Chr2 138260925 138262168 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g05181 39 281 Glycoside Hydrolase AT4G01700 73.251 4.20e-143 401
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g05181 - - gmx:100784196 486.493
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca2g05181 2 138260925 138262168 Seca2g05181 2 138260925 138262168 ECH
Seca8g06585 8 160368271 160369435 Seca2g05181 2 138260925 138262168 PCT