Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g06530 ATGGCCAAGGAAGCTTCTATGTGCCTCTTATTTCTCTCTTTTCTCATTATCTCCTGTTCTGGAGCTCTGGTGGGTTTTTCTTATCGTGAGAGTGGAGATACTTCAACTTCAACATCTTCTGGAACCATATCATTCCTCCAGCAAAGCAAGGTTTCCCCATCTAGGATTCGAATTTTTGTCTCAGATCATAGGATTTTGAGCAATTTAACCAACTCCAACGTGTCAGTTGATATCTACTTAAACAAAAGCCAAGTTGAAAATTTCATTACTTCAAAACCTTCTTCAATTTCAGGGCTAAAAGCTCACTTAGTGAACTTCCTTCCACATTTAAACATTAAAAGCATCATTGCTAGCTGTGACAGTGAGTGCTTAGCTCAAAATGAGATACCTTTGTTTGTATATGCTCTTAAATCAATTCATTCAGTCCTCAGCGAGCTTCATGTAGGCAGGGAAATAAAAGTCTCAGTAGCATTTCCACTGCCATTGTTAGAGAAGCTGAATGTGTCACATGAAAACAATATTCTTAGGATTCTTTCATATATAAAGGAAATAAAATCATTTGTTATGATAGAAGACAGCATTGAAGGAGAATTAAGCATGGGGGATCACTTTGTTGAGTCTTTTATCAAAAGAGCTACTCTTGCTGCTTCTATTCTTCCTTGCAAAGATGTTCCGTTGGTTATAACAATCAAGAGCCCAGTTATCCCCAGTTCAATGGAAGTAGCTCAATTTAGTGAGAGGGTATCCAAATATCTAGAACCAAGAACTCCTGTTACACAAAGAATAGCTGCATTATATGCAGAAGTTCATACAACAGAAGATTTTGCACAGAAAGAGCTTAAAAGGGAAGAGGAAGAATTGTTTCCTTTGTCCCGTAGAGAGACTCTAAGCAAATCCCACAAAAGAAGAACTCTTGATGACATAAACAACCCAACAAACACAGTTTTCCCTACAAATCCAGCATCATCTATACCAATCATCACACCCCCAGATACACCAACCATCATCACAGTTCCATCCACAAATCCTGTCACAATTTCCCCAACAAATCCAGCTGCAATGCCTGTAACAGTTCCTGGTACCACACCTACGCCCTTAACTCCAACAAATCCAGCCAATTCACCAGTACCAGTCACCAATCCAGCTACTACTCCTCCAACAGTTCCAGGGGCACAACCAGTAACCAACCCTGCAACATCTTATCCACCTCCATCAGGAAATGTTCCTGTCATAAACCCTCAACCACCTCCTACAAACACAAATGCTCCTCCTTCCATGCAAGGGCAGAGTTGGTGTGTGGCAAAGACAGGAGCTCCACAAGCTTCCCTTCAAGCAGCACTGGACTATGCTTGTGGAATGGGAGGTGTAGATTGTTCTCAAATTCAGCAGGGTGGGAGTTGTTACAGTCCAGTTACTTTGCAAAACCATGCTTCTTATGCCTTCAATAGCTACTATCAAAAGAATCCAGCTCCAACAAGTTGTGACTTTGGAGGGACTGCAACCTTAGTTAACACAAACCCAAGCTCAGGTTCTTGCATTTTCCCATCATCATCATCATCATCTTCATCAACAACAACGCCAATGTCATCACCCCCAACAACACCTACACAATCAATTCCACCACCAAGTCCAATAACACCTACAACATCAATTCCACCACCTGCATCATCAATTCCAACAGCACCACCAACATCATCTTCAGGAACAGGCACTTCTGGCTATGGTACCCCACCTTCAGTGTTAAATTCAAGCAACCCAGCTTCAGGTACAATGCCAGATTTTGGGTCTGAAAGCCCTCCTGTTGTAAATACCACATCAGCCTCGCACTCTGTAGGTCTGAAACCTTTAACTGGCTGCATAGTTCTTCTGATGATATCATTTGTCACTGCAAGTCTCAGTATGCGCCCATAA 1911 0.4186 MAKEASMCLLFLSFLIISCSGALVGFSYRESGDTSTSTSSGTISFLQQSKVSPSRIRIFVSDHRILSNLTNSNVSVDIYLNKSQVENFITSKPSSISGLKAHLVNFLPHLNIKSIIASCDSECLAQNEIPLFVYALKSIHSVLSELHVGREIKVSVAFPLPLLEKLNVSHENNILRILSYIKEIKSFVMIEDSIEGELSMGDHFVESFIKRATLAASILPCKDVPLVITIKSPVIPSSMEVAQFSERVSKYLEPRTPVTQRIAALYAEVHTTEDFAQKELKREEEELFPLSRRETLSKSHKRRTLDDINNPTNTVFPTNPASSIPIITPPDTPTIITVPSTNPVTISPTNPAAMPVTVPGTTPTPLTPTNPANSPVPVTNPATTPPTVPGAQPVTNPATSYPPPSGNVPVINPQPPPTNTNAPPSMQGQSWCVAKTGAPQASLQAALDYACGMGGVDCSQIQQGGSCYSPVTLQNHASYAFNSYYQKNPAPTSCDFGGTATLVNTNPSSGSCIFPSSSSSSSSTTTPMSSPPTTPTQSIPPPSPITPTTSIPPPASSIPTAPPTSSSGTGTSGYGTPPSVLNSSNPASGTMPDFGSESPPVVNTTSASHSVGLKPLTGCIVLLMISFVTASLSMRP. 637
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g06530 636 Coils Coil 266 286 - -
Seca8g06530 636 MobiDBLite consensus disorder prediction 533 560 - -
Seca8g06530 636 MobiDBLite consensus disorder prediction 511 608 - -
Seca8g06530 636 PANTHER BETA-1,3 GLUCANASE 426 522 IPR044788 -
Seca8g06530 636 Gene3D - 424 528 - -
Seca8g06530 636 Pfam X8 domain 431 501 IPR012946 -
Seca8g06530 636 MobiDBLite consensus disorder prediction 308 322 - -
Seca8g06530 636 MobiDBLite consensus disorder prediction 360 428 - -
Seca8g06530 636 PRINTS Proline rich extensin signature 377 398 - -
Seca8g06530 636 PRINTS Proline rich extensin signature 323 335 - -
Seca8g06530 636 PRINTS Proline rich extensin signature 520 545 - -
Seca8g06530 636 PRINTS Proline rich extensin signature 363 375 - -
Seca8g06530 636 PRINTS Proline rich extensin signature 402 418 - -
Seca8g06530 636 PRINTS Proline rich extensin signature 343 359 - -
Seca8g06530 636 MobiDBLite consensus disorder prediction 361 422 - -
Seca8g06530 636 FunFam Glucan endo-1,3-beta-glucosidase 4 425 518 - -
Seca8g06530 636 SMART X8_cls 430 514 IPR012946 -
Seca8g06530 636 MobiDBLite consensus disorder prediction 511 532 - -
Seca8g06530 636 MobiDBLite consensus disorder prediction 561 608 - -
Seca8g06530 636 MobiDBLite consensus disorder prediction 294 326 - -
Seca8g06530 636 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 19 - -
Seca8g06530 636 Gene3D Glycosidases 24 194 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g06530 Seca-Chr8 159772907 159776237 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g06530 393 517 Glycoside Hydrolase AT2G05790 45.736 6.02e-29 119
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g06530 - - gmx:100794910 696.812
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g06530 8 159772907 159776237 Seca8g06530 8 159772907 159776237 ECH
Seca8g06530 8 159772907 159776237 Seca2g05220 2 138682018 138685585 PCT