Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g05220 ATGGCCAAGGAAGCTTCTCTGTGCCTCTTGTTCCTCTCTTTTCTCATTATCTGCTGTTCGGGTACTCTGGTGGGTTTTTCCTATCGTGGGACAGGAGACACTGCATCTTCATTATTTGCTGGAACCACATTCCTCCAGAGAAACAAGATCTCTCAATCTCAGATTCGGTTTTTTGCAACAGATCATAAGATTTTGAGCACTCTGACCAACTCCAATGTGTCACTGTCAGTTGATTTCTTCTTAAATAAAAGCCTAGTTGAAGATTTTATTTCTTCAAAATCATCTGGAGTTTCATGGGTAAGAACTCATCTTGTAAGCATTCTTCCAAAAGTAGACATCAGAAGCATCATTGTTAGCTATGGCAGTGAGAGTTTAGGCCAAAATGAGATACCTTTACTTTTATCCGCTCTGAAATCAATTCATTCAGTTCTCAGCAAGATTCAATTAAGCAAAGAAGTAAAAGTCTCAGTAGCATTTCCACTTTCATTCTTAGAGAATTTGAATCCATCAGATGAAAATGATCTATGTAGGATTATTTGGTTTATAAAGAAAATAAATTCCTTTATCATGATAGAAGACAACATTGATGGGGAATTAAGCATGGGGGATAACTTTGTTCAATCTATTATCACAAGAGCCACCATTGCTGCTTGTATTCTTCCATGCAATGATGTTCCCATGGTTCTGGCAATCAAGAGCGCAGTTCTTCCTAGTTCAATGGAATTAGCTCAATTTAGTGAAGCAGTGTTCAAATATCTTGAAGCAAAATCTCAGATTACAAAAAGATTAGTTGCGTTATATGTAAAAGTAGACACTGCTGAAGATTTTGGACAGAAAGAGCCCAGAAGACAAGAGGAAGAGATATTTCCTTTGTCCCATATCAGAAGAACTCTACAAGATACAAACAACTCACCTTCCCCAGTTTTCCCCACAAATCCTACTTCAGCTACACCAGTCATCACTCCTCCAGACACACCAACCATCATCACAGTTCCTTCGACCAATCCTGTCACAGTTTCCCCAACCAATCCAGCTGCAACTCCTGTGACAGTTCCTTCTACCACACCTGTTCCATTACCTCCTTCAAATCCAGCCAATTCACCAGTACCTGTCACCAATCCGGTTCCAGCTCCCATCACAGTTCCAGGGGCACAACCAGTTACCAACCCTGTGACTTCTTCTTATCCACCCCCATCAGGAAGTGTTCCTATTATGAACCCCCAGCCTCCTCCTGCAAACACAAATGCTCAAGCCATGCCAGGGCAGGGCTGGTGTGTGGCAAAGACTGGAATTCCAGAAACTCAGCTTCAATCAGCATTGGATTATGCCTGTAGCAGTGTAGATTGTTCACAAATTCAGCAAGGTGGGAGTTGTTACAGTCCAAATTCACTACAAAACCATGCTTCTTTTGCCTTCAACAGTTACTACCAAAAGAATCCTGCACCAACAAGCTGTGACTTTGGAGGGTCTGCCACCATTGTTAACACCAATCCAAGCTCAGGTACTTGCATTTACCCATCATCTTCAGGAGTAGGCACATCCGGGTAA 1548 0.418 MAKEASLCLLFLSFLIICCSGTLVGFSYRGTGDTASSLFAGTTFLQRNKISQSQIRFFATDHKILSTLTNSNVSLSVDFFLNKSLVEDFISSKSSGVSWVRTHLVSILPKVDIRSIIVSYGSESLGQNEIPLLLSALKSIHSVLSKIQLSKEVKVSVAFPLSFLENLNPSDENDLCRIIWFIKKINSFIMIEDNIDGELSMGDNFVQSIITRATIAACILPCNDVPMVLAIKSAVLPSSMELAQFSEAVFKYLEAKSQITKRLVALYVKVDTAEDFGQKEPRRQEEEIFPLSHIRRTLQDTNNSPSPVFPTNPTSATPVITPPDTPTIITVPSTNPVTVSPTNPAATPVTVPSTTPVPLPPSNPANSPVPVTNPVPAPITVPGAQPVTNPVTSSYPPPSGSVPIMNPQPPPANTNAQAMPGQGWCVAKTGIPETQLQSALDYACSSVDCSQIQQGGSCYSPNSLQNHASFAFNSYYQKNPAPTSCDFGGSATIVNTNPSSGTCIYPSSSGVGTSG. 516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g05220 515 Pfam X8 domain 424 492 IPR012946 -
Seca2g05220 515 SUPERFAMILY (Trans)glycosidases 25 191 IPR017853 -
Seca2g05220 515 SMART X8_cls 423 505 IPR012946 -
Seca2g05220 515 Pfam Glycosyl hydrolases family 17 43 189 IPR000490 GO:0004553|GO:0005975
Seca2g05220 515 MobiDBLite consensus disorder prediction 299 315 - -
Seca2g05220 515 Gene3D Glycosidases 24 194 - -
Seca2g05220 515 FunFam Glucan endo-1,3-beta-glucosidase 4 418 509 - -
Seca2g05220 515 PANTHER BETA-1,3 GLUCANASE 421 509 IPR044788 -
Seca2g05220 515 MobiDBLite consensus disorder prediction 299 321 - -
Seca2g05220 515 Gene3D - 417 509 - -
Seca2g05220 515 PRINTS Proline rich extensin signature 332 353 - -
Seca2g05220 515 PRINTS Proline rich extensin signature 302 318 - -
Seca2g05220 515 PRINTS Proline rich extensin signature 354 370 - -
Seca2g05220 515 PRINTS Proline rich extensin signature 373 390 - -
Seca2g05220 515 PRINTS Proline rich extensin signature 391 416 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g05220 Seca-Chr2 138682018 138685585 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g05220 383 508 Glycoside Hydrolase AT2G05790 43.411 3.16e-24 103
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g05220 - - ccaj:109798054 571.237
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca2g05220 2 138682018 138685585 Seca2g05220 2 138682018 138685585 ECH
Seca8g06530 8 159772907 159776237 Seca2g05220 2 138682018 138685585 PCT