Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g06497 ATGGGGTCTTTGGTTGCTGAAACTGCGAAGAAGAAAGCAATGTGGTTGTGTCCAAAGGTTTTGAGTTTTAGTCCTTCTGAAAGATGGGGGCACACTGCTTGCTTCTCCCAGGGGCTTATGTATGTCTTTGGGGGATGTTGTGGAGGATTGCATTTTAGCGATGTTCTGTGTTTGGACCTTGACAAAATGGATTGGAGGAAGCTTGTTACTACAGGTGAAAAGCCAGGTCCAAGAGATAGCCATAGTGCTGTTCTTGTAGGTCATAAAATGATAGTGTTTGGTGGTACAAATGGGTTCAAGAAGGTAAATGATACTCATATACTGGATCTTGTAACCAAAGAGTGGGTTCGTCCTAAATGTGAAGGGACTCCTCCTTCTCCAAGGGAAAGCCACACTGCCACTCTTGTTGGTGATGAAAGATTAGTGATTTTTGGTGGAAATGGAGAAGGTGAAGCAAATTATTTAAATGATTTGCATATTCTAGACCTTCGAACCATGAGATGGACTTCTCCTGAGGTCAAAGGTGATTTGCCTATCCCTAGGGACAGTCACACTACACTTGCAATTGGGAACAAGCTTATTGTGTATGGTGGAGACAGTGGTGATCAGTATCATGGTGATGTTAATATGTTTGATATAGAAACAATGACTTGGTCAAGGTTGAAAATTCAAGGCTCTTCACCAGGAGTCAGGGCAGGTCATGCAGCAGTGAATATTGGAACCAAGGCAAATGAACTCTTCAACGATTTACAGGTCTACATCATTGGAGGGGTTGGAGATAAACGTTATTGCAATGACATCTGGGTCTTTGATATTTGCACTTGTTTGTGGACTCAACTTGATATACATGGTCAACAGCCACAGGGGAGGTTTTCTCACACAGCTGTTGTTGCAGACATGGCTATTGCCATATATGGCGGGTGTGGGGAAGATGAACGTCCTTTGAATGAATTGTTAGTTTTGCAGCTTGGTGCAGAGCATCCAAATGGGTGTTACAATATTCCCAAGTGCAAACTTTTTGGAACTTATTGGAATCAAGAAAAGAGGACCATCCCAGGAGGAGCAGATGCCAACTCGAAAACTCCATGCATGGGGAATAACATGGAAGTCTTAGGAAAATGGGCTCGTGAAGTTGCATCAGAAAAAGTGCAACCTTATCACTTTGATTCAGGAACTTCACAGCAGAAGAGGAGGAGAATTGCTGCTGCAAAGGTTTGGAATGTTGAATCAGAACAAGAAGAACATTCTCTTTCACTGTCCCAGCATTCATCTCCATCTCAATCTGATCAAGAACAAACCCCAGGTCAAAAAAGGAATGCTTCTGTCATGGATTCTCAACAGTATCATCGGCTCAAAGTGATCAATAAAATCCCAAGTAATTTCCAACTTGACAATGTCTCAAGTTATAAGAGAGGTTTGAAGAATATCTCACAAAGAAGTCCACAAGATCTTCATATCCTTGAATATCAACCAAAACAAGAACAGTATCTTCATGTCAATGAGGATATAAAAGGAGCTCGACACCAAGCTACAGAGCAGAAGCTTGTAGGGAGAGGACACACTCAACACATGATTGGTGCTGAAGTTCGTGGGAAAGTTGATGGAGCCTTTGATTCAGGTTTGCTAATGACTGCAGCTGTGAATGGAAGGATTTTCAGAGGAGTCTTGTTTGCACCAGGAGCAGGAGTTGTGTCCACCAGTGTTGAGCCAAATTGTTCTTTATCATGTTTATTTCCCTCAAGTCAACCATTTGTAAGCTCAAATCATGTGACAGAGCCCTGCCATGGCTTAAGGCAACTGGCTCGACCATCTCCAGTTATGAGAAGCACTACTACTACCTCGTTACCTGAAGAGCATAAAATCAGGAGTGACCTTCAAGGGTTGGTTTTGACACTTGGAGGACCTGCTAGTGGCAACCATGCTTCATCCTAA 1932 0.4275 MGSLVAETAKKKAMWLCPKVLSFSPSERWGHTACFSQGLMYVFGGCCGGLHFSDVLCLDLDKMDWRKLVTTGEKPGPRDSHSAVLVGHKMIVFGGTNGFKKVNDTHILDLVTKEWVRPKCEGTPPSPRESHTATLVGDERLVIFGGNGEGEANYLNDLHILDLRTMRWTSPEVKGDLPIPRDSHTTLAIGNKLIVYGGDSGDQYHGDVNMFDIETMTWSRLKIQGSSPGVRAGHAAVNIGTKANELFNDLQVYIIGGVGDKRYCNDIWVFDICTCLWTQLDIHGQQPQGRFSHTAVVADMAIAIYGGCGEDERPLNELLVLQLGAEHPNGCYNIPKCKLFGTYWNQEKRTIPGGADANSKTPCMGNNMEVLGKWAREVASEKVQPYHFDSGTSQQKRRRIAAAKVWNVESEQEEHSLSLSQHSSPSQSDQEQTPGQKRNASVMDSQQYHRLKVINKIPSNFQLDNVSSYKRGLKNISQRSPQDLHILEYQPKQEQYLHVNEDIKGARHQATEQKLVGRGHTQHMIGAEVRGKVDGAFDSGLLMTAAVNGRIFRGVLFAPGAGVVSTSVEPNCSLSCLFPSSQPFVSSNHVTEPCHGLRQLARPSPVMRSTTTTSLPEEHKIRSDLQGLVLTLGGPASGNHASS. 644
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g06497 643 SMART kelc_smart 140 191 IPR006652 GO:0005515
Seca8g06497 643 SMART kelc_smart 192 241 IPR006652 GO:0005515
Seca8g06497 643 SMART kelc_smart 251 300 IPR006652 GO:0005515
Seca8g06497 643 Pfam Galactose oxidase, central domain 39 85 - -
Seca8g06497 643 Pfam Galactose oxidase, central domain 87 135 - -
Seca8g06497 643 Pfam Galactose oxidase, central domain 139 189 - -
Seca8g06497 643 SUPERFAMILY Kelch motif 252 320 IPR015915 GO:0005515
Seca8g06497 643 Gene3D - 12 120 IPR015915 GO:0005515
Seca8g06497 643 MobiDBLite consensus disorder prediction 412 445 - -
Seca8g06497 643 PANTHER ACYL-COA-BINDING DOMAIN-CONTAINING PROTEIN 5 13 96 - -
Seca8g06497 643 MobiDBLite consensus disorder prediction 411 445 - -
Seca8g06497 643 SUPERFAMILY Kelch motif 20 242 IPR015915 GO:0005515
Seca8g06497 643 Gene3D - 121 402 IPR015915 GO:0005515
Seca8g06497 643 Pfam Galactose oxidase, central domain 231 287 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g06497 Seca-Chr8 159378634 159382978 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g06497 15 506 Acyl Lipid Metabolism Gene Families AT3G05420 27.379 3.43e-37 145
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g06497 K20285 - gmx:100801275 1021.15
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g06497 8 159378634 159382978 Seca8g06497 8 159378634 159382978 ECH
Seca8g06497 8 159378634 159382978 Seca2g05246 2 139087624 139091927 PCT