Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g05246 ATGGGCTCTTTGGTAGCTGAAGTTGCGAAGAAGAAAGCAATGTGGCTGTATCCAAAGGTTATGGGTTTTGATCCTTCTGAAAGATGGGGGCACTCTGCTTGCTTCTCCAAGGGGCTTATGTATGTTTTTGGGGGCTGTTGTGGGGGAATGCATTTCAGTGATGTTCTCACTTTGGACCTTGACAAAATGGTTTGGAGCAAGCTTGCTACCACTGGTGAAAAGCCAGGTCCTAGAGATAGCCATAGTGCTGTCCTTGTAGGGAATAAAATGATAGTGTTTGGTGGCACAAATGGCTTCAAGAAAGTGAATCATATTCATGTATTGGATCTTGTTACCAAAGAGTGGGTTCGTCCTGAATGTAAAGGGACGCCTCCTTCTCCACGTGAAAGCCACACTGCCACGCTAGTTAGTGATGAAAGATTAGTGATTTTTGGTGGTAGTGGAGAAGGTAATGGAAACTATTTAAATGATTTGCACATTCTTGATCTACCAACCATGAGATGGACTTCTCCTGAGTTGAAAGGTGATTTCCCTGTCCCTAGGGACAGTCACAGTACCCTTGCAATTGGGAACAAGCTTATTGTGTATGGTGGAGACTCTGCTGATCAGTATCATGGCAATGTTCATGTGCTTGATATGTCCACAATGACTTGGTCTAGGTTGACAGTTCAAGGTTCTTCACCAGGAGTCAGGGCAGGCCATGCTGCAGTGAATATTGGAACTAAGGCAAGTTATATTACTGTACAGGTCTATGTCATTGGAGGGGTTGGAGATAAACATTACTATAATGACATTTGGATCTTTGATATCTGCACTTGTTCATGGACTCAACTCAATATACATGGACAACAACCACAAGGGCGATTTTCTCATACTGCTGTTGTTGCAGACATGGATATAGCTATATATGGCGGGTGTGGGGAAAATGAACGTCCTCTCAATGAATTGTTAGTGTTGCAGCTTGGAGCAGAGCATCTAAATGGACGTTCATACATTTCCATGGGCAAAGTTTTTGGAACTTATTGGAATCAAGAAAAGAAAATTATCCCTGGAAGAACAGTTACCAACTCGAAAACTATACTTATGAGGAAAAATAATGTGGAAGTTTTTGGAAAAGGAGCTTATGAAGTTGTATCAGAAAAAGCTCCATCTATTCACTTGGATTCAGGTACTTCCCCACAGAAGAGGAGGAGAATTGCTGCTGCAAAAGTGTGGGATGTTGAATCAGAACAAGAAGAACATTTTCTTTCATTGTCCTTGCATTCATCTCCATCTCAATCTGATCAAGAACAGACCCCAGGTCAAAAAGCAAATGCTTTTCTCATGGATTCTCATCAGAATATTGTGCCTAAACAGATAAATCAAATTCCAACCATATGCCAACATGACACTGGCTCAAGTATTAAGAGAGCCTTGAAGAATATCCCACAAAAAAGTCCACAAAATCTTCATTTCCTAGAACATCAACTAAAACGACAACAGTGTCTCCATGACCATGAGGATAGAAAAGGAGCTCAACACCTGATTGGTGCTGAAGTTTGGAGGAAAATTGATGGAGCCTGTGAGTCAGGTTTGCCCTTACCTGCAGCTGTGAATGGGAGGACATTTAAGGGAGTCTTATTTGCACCTCAGGGATCAGCAGGAGTTGTCTCAAGGGGGGCCAGTGTTGATTCTCTAACAAGAGCATTTCTCTCCACTCAACCATATATGAAGGCAAATCACGTGGATTTTTTAAGGACTTCTCAACAGTCATCTATTTGTTTGCATGCAGAGTGTTGCCATGGTTCCCGGCAAGCTTCAGTTGCTCCACCATTTCCAATCATGCGAGGCACTCCGGCTGTATCGAAGGAGCATAAAATCAGAAGTGACCTACAAGGATTGGTTTTAACACTTGGAGGACCTGCTAGTGGAAATCCCTAG 1920 0.4255 MGSLVAEVAKKKAMWLYPKVMGFDPSERWGHSACFSKGLMYVFGGCCGGMHFSDVLTLDLDKMVWSKLATTGEKPGPRDSHSAVLVGNKMIVFGGTNGFKKVNHIHVLDLVTKEWVRPECKGTPPSPRESHTATLVSDERLVIFGGSGEGNGNYLNDLHILDLPTMRWTSPELKGDFPVPRDSHSTLAIGNKLIVYGGDSADQYHGNVHVLDMSTMTWSRLTVQGSSPGVRAGHAAVNIGTKASYITVQVYVIGGVGDKHYYNDIWIFDICTCSWTQLNIHGQQPQGRFSHTAVVADMDIAIYGGCGENERPLNELLVLQLGAEHLNGRSYISMGKVFGTYWNQEKKIIPGRTVTNSKTILMRKNNVEVFGKGAYEVVSEKAPSIHLDSGTSPQKRRRIAAAKVWDVESEQEEHFLSLSLHSSPSQSDQEQTPGQKANAFLMDSHQNIVPKQINQIPTICQHDTGSSIKRALKNIPQKSPQNLHFLEHQLKRQQCLHDHEDRKGAQHLIGAEVWRKIDGACESGLPLPAAVNGRTFKGVLFAPQGSAGVVSRGASVDSLTRAFLSTQPYMKANHVDFLRTSQQSSICLHAECCHGSRQASVAPPFPIMRGTPAVSKEHKIRSDLQGLVLTLGGPASGNP. 640
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g05246 639 PANTHER KELCH DOMAIN-CONTAINING PROTEIN 14 555 - -
Seca2g05246 639 Pfam Galactose oxidase, central domain 39 85 - -
Seca2g05246 639 Pfam Galactose oxidase, central domain 87 135 - -
Seca2g05246 639 Pfam Galactose oxidase, central domain 139 189 - -
Seca2g05246 639 Gene3D - 11 172 IPR015915 GO:0005515
Seca2g05246 639 Gene3D - 173 359 IPR015915 GO:0005515
Seca2g05246 639 Pfam Galactose oxidase, central domain 231 285 - -
Seca2g05246 639 SUPERFAMILY Kelch motif 73 322 IPR015915 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g05246 Seca-Chr2 139087624 139091927 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g05246 65 321 Acyl Lipid Metabolism Gene Families AT3G05420 28.358 6.12e-28 117
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g05246 K20285 - gmx:100796366 905.975
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca2g05246 2 139087624 139091927 Seca2g05246 2 139087624 139091927 ECH
Seca8g06497 8 159378634 159382978 Seca2g05246 2 139087624 139091927 PCT