Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g06044 ATGTCTCGAATCTTCTCCGCATGGAAGAAGAAGAAGCAGCTTCACCTCAACCAAATATCTACTTTTTCTTCTTCTTCACATGCCCACTTCACTCTTTCACCACATCTTCATAACCACCCCACCTTCTACCACAGGTTCACCTTCTCCCTATTCTCCATCAATCATCGCCGCCACCAACGCTGCAACTGGCATAGCATTGCACCTCTCCAAGGTACCTTGTTGCAGATTGGGAATAGTATTGGTCGAGGTGGCGGTGAGCCACCAGAGGGTGGTGATGGTGATGGGAATGGTGTGGCTGTGCACAGTCCTCCGGGTCCACCTTTTGCACCTGGCCTTAATCTTATTCGGGCTGAGAAGACTGCGTGGGGAGGTTCCAATTTGGGTAGGGATTTGCCTACTCCAAAGGAAATCTGCGAGGGTCTTGACAAGTATGTTATTGGTCAACACAGGGCCAAAAAGGTGCTTTCAGTGGCTGTTTATAACCACTATAAAAGAATATACCATGCCTCTTTACAGAAAGGGTCAGGGGAAGATTCGGGAATTTCAGAGGGATTAGATGATGATGATCATGTGGAACTAGAAAAGAGTAATGTTCTGTTGATGGGTCCAACAGGTTCAGGGAAGACATTACTTGCAAAAACACTAGCTCGATTTGTGAATGTCCCATTTGTCATTGCTGATGCAACAACACTAACACAGGCTGGTTATGTTGGAGAAGATGTTGAATCAATATTGTATAAACTACTTGCGGCAGCAGAGTTCAATGTTCAAGCAGCTCAGCAAGGGATTGTTTACATTGATGAAGTGGACAAGATTACTAAGAAGGCTGAGAGCTTAAACATTAGCCGGGATGTTTCTGGTGAGGGTGTTCAGCAGGCATTATTAAAAATGCTGGAAGGAACTGTTCTCACAACAACTCCATTTTGA 927 0.452 MSRIFSAWKKKKQLHLNQISTFSSSSHAHFTLSPHLHNHPTFYHRFTFSLFSINHRRHQRCNWHSIAPLQGTLLQIGNSIGRGGGEPPEGGDGDGNGVAVHSPPGPPFAPGLNLIRAEKTAWGGSNLGRDLPTPKEICEGLDKYVIGQHRAKKVLSVAVYNHYKRIYHASLQKGSGEDSGISEGLDDDDHVELEKSNVLLMGPTGSGKTLLAKTLARFVNVPFVIADATTLTQAGYVGEDVESILYKLLAAAEFNVQAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTVLTTTPF. 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g06044 308 Gene3D - 126 307 IPR027417 -
Seca8g06044 308 SMART AAA_5 194 308 IPR003593 GO:0016887
Seca8g06044 308 Pfam AAA domain (Cdc48 subfamily) 194 305 IPR003959 GO:0005524|GO:0016887
Seca8g06044 308 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 130 307 IPR027417 -
Seca8g06044 308 PANTHER ATP-DEPENDENT CLP PROTEASE ATP-BINDING SUBUNIT CLPX-LIKE, MITOCHONDRIAL-RELATED 59 305 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g06044 Seca-Chr8 154065227 154070075 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g06044 198 297 Miscellaneous Gene Families AT3G02450 36.634 7.62e-07 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g06044 K03544 - lja:Lj5g3v1211580.1 380.948
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca10g04302 10 97458014 97468294 Seca8g06044 8 154065227 154070075 PCT