Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g04302 ATGTCTCGAATCTTCTCGAGATGCAAGAAGGTGAAGGAAATGACGTCACTTTCGGGGACCCATTTGGCCGTTCCGGCGGGTAACCATCGAACCGGGTTCCGGTTCAACCGGGTTCATCCAATCTCGACCCACCTGAACCACATAATCGTTGCCGGAGCACATCGCCGGCGGGAGTCGCTGGTCGGCGTTCAGGAACGGTACAAGTGGGACCGTGGCGGGTCCGATGACAGCAACCCCAACCCGACCCGAAAGATTCGGGCTGAGACTAATTGCCCACGTTGCACCAAGGACATGAACATTCTATTCTCCAATCGCCACTTTCCCATGAGTGATTCTGATTGCGGTGGTTCCAACAACAATTTGGGTCCTGTTGGTGGAGGTGAAGGTGGTTACCAAGCTGTGAATCTATGCCCAAGTTGCAAAACTGCTTATTACTTTAGACCTTACAACACTGCACCTTTGCAAGGTACTTTTGTGGAGATTGGTAGGGTCACTAATAACAATAATGGGAGTGGGAAGTCACAATCTACTAAGAGGATCACACATGGAAAAGGTGGTGGTGGCAAAGAGAGTGGTGGTAGTAGTAAGAATAGTCATGGAGGAGAGGATATTGGGCTCAAGGGTAGTGCTAGTAATTGGCTTGAAGTGTCATTGAGGGACACTTTGAGATCTTACAATGGTGGTAATAATGGGGAGCCACCTGAGACATGGCCTCCACCACCAGGTGGTGGTAATGGGAATGGTCTGGCTGTGCATACTCCTCCAGGCCCTCCTTTTGCACCAGGGTTTAATGTTATCCGGGCTTCAGGGCTGCGGGAAGGCGGTTCAGGCGGCGGAGGTGGGGGCAATGGAGAGAAGACAACCTGGGGAGGGTCTAATTTGGGAAAGGATTTGCCCTCTCCTAAGGAGATCTGCAAGGGTCTTGACAAGTTTGTTATTGGCCAAGACAGAGCCAAGAAGGTGCTTTCTGTAGCTGTTTATAACCATTATAAAAGAATATACCATGCCACTTTACAGAAAGGGTCAGGTGCAGATTCAGGAATTTCAGAAGTAAAAGATGATGACGATAACGTGGAGCTAGAAAAGAGTAACGTTCTCTTGATGGGTCCAACGGGGTCAGGGAAGACATTACTTGCAAAATCACTAGCTCGATTTGTGAATGTTCCATTTGTTATTGCTGATGCAACAACCTTAACACAGGCAAGAGAAAATTTTGTTGTTATTGATGTAAGAGGAACTGTTCTAATTTTCAGGCCGGTTATGTTGGAGAAGATGTCGAATCGATACTGTATAAACTACTTGCGGTTTCATGTCCTCATACATGATCTAGGTTGCTTATCTAATAATGAGGCAGCAGATTTCAATGTTGCTGCAGCTCAACAAGGAATAATTTACATCGATGAAGTTGACAAGATAACTAAGAAGGCTGAGAGCTTAAATGTCAGTCGGGATGTTTCTGGTGAGGGTGTTCAGCAGGCATTATTAAAAATGCTGGAAGGAACTATAGTAAATGTTCCGGAGAAAGGAGCCAGGAAGCATCCACGGGGGGATAACATTCAGATGGACACAAGGAATATTCTTTTCATTTGTGGTGGAGCATTTATTGATCTTGAAAAAACCATTTCAGAGAGACGACAAGATTCTTCTATTGGTTTTGGGGCACCAGTTCGTGCTAATATGAGAACTGGTGCAATAATAGATTCTGCAGTAACGTCATCTTTACTTGAATCGGTGGAAAGTGCTGATCTTATTGCGTATGGCCTCATACCAGAGTTTATTGGTCGATTCCCCATTTTAGTTAGCTTGTCAGCTTTAACTGAAGAACAACTTATGCTGGTCCTCACAGAACCCAAAAATGCTCTTGGTAAACAGTACAAGAAATTATTTAGCATGAATAATGCATATGGAGATGCAAATCATTCAAACTTCAAATTGGTTAAAATGATAGATTTAATGATTGTCTATGGCAGGACCTATTCTAATAGTGACTCACTGACTAAAGGACCCGGATTCCCTGCATTCACGAAATCACGCATTCATCAAATGGTAGCCGTCCGATCTTCGTCCGATGAAGATCGGACGGCTCAGATGCCGAGGCTTTTGTTGTTATTGTGGGCTTCCTTGAAGCCATTACATGTAAAGCTACACTACACGGAAAAAGCTCTGAGAATGATCGCAAAGAAAGCAATGGCAAAAAATACTGGTGCTAGGGGTTTAAGAGCCCTACTAGAAAGCATTTTAACCGAAGCCATGTTTGAGATTCCAGATATTAAGACTGGATCTGACAGGGTTGATGCAGTTGTTGTTGATAAAGAGTCAATAGGATCACTAAATGCCCCCGGATGTGGAGGGAAGATTCTTCGCGGAGATGGTGCTTTGGAGCGCTATCTAGCTAAGATGAAGGATTCAGTGATGAATGTTGATGTAGCTGAATCAGATATACAAGAGGGGGATTCAGATCTTTCATCAAGAGCCATGAGCATGTAA 2487 0.4467 MSRIFSRCKKVKEMTSLSGTHLAVPAGNHRTGFRFNRVHPISTHLNHIIVAGAHRRRESLVGVQERYKWDRGGSDDSNPNPTRKIRAETNCPRCTKDMNILFSNRHFPMSDSDCGGSNNNLGPVGGGEGGYQAVNLCPSCKTAYYFRPYNTAPLQGTFVEIGRVTNNNNGSGKSQSTKRITHGKGGGGKESGGSSKNSHGGEDIGLKGSASNWLEVSLRDTLRSYNGGNNGEPPETWPPPPGGGNGNGLAVHTPPGPPFAPGFNVIRASGLREGGSGGGGGGNGEKTTWGGSNLGKDLPSPKEICKGLDKFVIGQDRAKKVLSVAVYNHYKRIYHATLQKGSGADSGISEVKDDDDNVELEKSNVLLMGPTGSGKTLLAKSLARFVNVPFVIADATTLTQARENFVVIDVRGTVLIFRPVMLEKMSNRYCINYLRFHVLIHDLGCLSNNEAADFNVAAAQQGIIYIDEVDKITKKAESLNVSRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDNIQMDTRNILFICGGAFIDLEKTISERRQDSSIGFGAPVRANMRTGAIIDSAVTSSLLESVESADLIAYGLIPEFIGRFPILVSLSALTEEQLMLVLTEPKNALGKQYKKLFSMNNAYGDANHSNFKLVKMIDLMIVYGRTYSNSDSLTKGPGFPAFTKSRIHQMVAVRSSSDEDRTAQMPRLLLLLWASLKPLHVKLHYTEKALRMIAKKAMAKNTGARGLRALLESILTEAMFEIPDIKTGSDRVDAVVVDKESIGSLNAPGCGGKILRGDGALERYLAKMKDSVMNVDVAESDIQEGDSDLSSRAMSM. 829
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g04302 828 MobiDBLite consensus disorder prediction 166 207 - -
Seca10g04302 828 SMART ClpB_D2_small_2 605 774 IPR019489 -
Seca10g04302 828 Pfam C-terminal, D2-small domain, of ClpB protein 711 753 IPR019489 -
Seca10g04302 828 Gene3D - 292 603 IPR027417 -
Seca10g04302 828 Pfam AAA domain (Cdc48 subfamily) 450 598 IPR003959 GO:0005524|GO:0016887
Seca10g04302 828 SMART AAA_5 361 556 IPR003593 GO:0016887
Seca10g04302 828 CDD RecA-like_ClpX 299 602 - -
Seca10g04302 828 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 297 630 IPR027417 -
Seca10g04302 828 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 676 770 IPR027417 -
Seca10g04302 828 MobiDBLite consensus disorder prediction 223 295 - -
Seca10g04302 828 MobiDBLite consensus disorder prediction 166 181 - -
Seca10g04302 828 PANTHER ATP-DEPENDENT CLP PROTEASE ATP-BINDING SUBUNIT CLPX-LIKE, MITOCHONDRIAL-RELATED 86 633 - -
Seca10g04302 828 Gene3D - 705 783 - -
Seca10g04302 828 Gene3D - 604 641 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g04302 Seca-Chr10 97458014 97468294 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g04302 K03544 - gmx:100805340 818.92
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca10g04302 10 97458014 97468294 Seca10g04302 10 97458014 97468294 ECH
Seca10g04302 10 97458014 97468294 Seca8g06044 8 154065227 154070075 PCT