Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g05831 ATGTTCAAAATCCACACTTTCTCCTCCTACCTCGTGAAGAATCTCAAGCTCAACCTTCATGCAAGGTCTATATCTAGCCTCAAAGTAGTGTGGCGCAAAGACCCAGCACTGGACCGAGCCATAGAGATCGATAAGCGTTATAAGCAATGTGCCCGCGTTGTGAAGGAAGTCCTCAACGAACCGAATCAAGTTATCCCTCTTCACTACCTCGAGAAACGCCGCGAAAGGATGCGCCTCAAGGTGAAAGTTGAAACCTTTCTGAACCAAAACCCTGCCTTGTTTGATGTCTACTATGGTCGCATCAAACCCAAAGCTCAACCTGTTCGGTTTCTCCGGGTAAGTGATCGACTTCGCCAATTTCTAGAGGAAGAAAAACGGATTTTCAGGGAGAATGAGCCCTTGATTGTGTCAAAGTTGTGTAAATTGTTGATGATGTCGAAGAACAAGGTGGTTAGTGCTGATAAATTGCTTCATGTGAAGAGGGAGTTTGGTTTCCCAAATGATTTTTTGGTGGATTTGGTTCCCAGGTACCCGCAGTATTTTAGGCTAACTGGATTTCCTGGGGAGGGGCAATCGTTTCTGGAATTGGTTTCTTGGAACCCTGAGTTTGCAAAATCTGTTATTGAGCAAAGGGCTGAAGAAGAGAGTAGGAGAATAGGGATAGGGGTTAGGCCTAATTTCAATGTCAAGCTTCCCCCTGGGTTTGTGTTGAGGAAGGAGATGAGGGAGTGGATTAGGGATTGGATTGAGCTTGATTATATATCCCCTTATGAGGATGTGTCCCATTTGGATCAAGCTTCTAGAGAGATGGAGAAGAGGAATGTTGGGGTGTTCCATGAGCTGCTTTCTCTTTCATTGCATAAGAGGATTCCGGTGCCAATCCTGGGAAAATTTTGTGAAGAATATAGGTTTTCAAATGCATTTTCAAGCGCTTTTACAAGGCATTCAGGGATATTTTACTTGTCCTTGAAAGGTGGGATAGAAACAGCAATGTTGAGAGAAGCATACAAAGGTGACAAGTTGATTGACCTGGATCCATTGCTACAGATAAAAGAAAAATTTATTGAGATGTTGGAGGAGGGTTGGAGGCAAAGAGCCGAGCAGTTGAGGTTGAAACAAGAGAAAATTAAGAAAGATATGGAATTTTTGGCCTCAAAAGTTAGTGAATAA 1170 0.4325 MFKIHTFSSYLVKNLKLNLHARSISSLKVVWRKDPALDRAIEIDKRYKQCARVVKEVLNEPNQVIPLHYLEKRRERMRLKVKVETFLNQNPALFDVYYGRIKPKAQPVRFLRVSDRLRQFLEEEKRIFRENEPLIVSKLCKLLMMSKNKVVSADKLLHVKREFGFPNDFLVDLVPRYPQYFRLTGFPGEGQSFLELVSWNPEFAKSVIEQRAEEESRRIGIGVRPNFNVKLPPGFVLRKEMREWIRDWIELDYISPYEDVSHLDQASREMEKRNVGVFHELLSLSLHKRIPVPILGKFCEEYRFSNAFSSAFTRHSGIFYLSLKGGIETAMLREAYKGDKLIDLDPLLQIKEKFIEMLEEGWRQRAEQLRLKQEKIKKDMEFLASKVSE. 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g05831 389 Pfam Plant organelle RNA recognition domain 33 362 IPR021099 GO:0003723
Seca8g05831 389 Coils Coil 366 386 - -
Seca8g05831 389 PANTHER PROTEIN WHAT'S THIS FACTOR 1 HOMOLOG, CHLOROPLASTIC 23 375 IPR045040 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g05831 Seca-Chr8 150961512 150962681 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g05831 - - gmx:100778092 656.751
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g05831 8 150961512 150962681 Seca8g05831 8 150961512 150962681 ECH
Seca2g04968 2 136310560 136313781 Seca8g05831 8 150961512 150962681 PCT