Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g05790 CAAAATTCCAGGTGCCTCGCTCAATTGTCCAGACACATATATAAAGAACAGCCGAAGCTGCAGCACAAAAACTCAGACCCCAAAGGAACACTTCTGAATGTTCACATTTGTTTCTCGGTTTCGTCGTGCTTCGCAACAATGATAGGTCACTCCAGCACCCGCAGTCGTAAAGAAGTTAGAATCGTCGTAGCGGGTGACGCAGACACCGGAAAATCGACCCTCATAGCCGCTATGGCGTCGGAGTCTTTCCCCGAGTCCGTCTCCTCCGTGCTTCCTCCCACTCGCTTGCCCCATAATTCGTTCCCCGATTCTGTTCCTCTCACCCTCATTGACACACCTTCCAGCTTGGGAAAACAAGGCACTCGCAATGAAGAATTGAAGCGAGCTGATGCGGTGGTTTTAACCTATGCTTGTGATGAGCCAGGGAGCTTTGAGCGTCTGAGTACTTACTGGCTCCCTGAACTGCAGAACTTAGAGGTGAAGGCACCTGTGATTGTGGTTGGTTGTAAATTTGATCTTCGTGATGAAAGCCGGCCAGTGAGCTTAGAGAGTCTCACCACACGTATCATGCGGCAGTTCAGGGAAATTGTCACCTGTATTGAATGCTCTGCAGCTACACTTTATCAGGTCCCTGAAGTTTTTTATTTTGCACAAAAAGCAGTCCTGCATCCAGTAGATCCATTGTTTGATTATGAAAGACATGCTTTAACAGATCGATGTGTAAGGGCATTAAGAAGAATATTTGTTCTTTGTGATCACAACATGGATGGTGCCCTCAATGATGAAGAACTGAATGAGTTTCAGGTTAGATGCTTCAATACACCATTGCAGCCATCTGAAATAGTGAAAATCAAAACAATTGTAGAGGAGAAAGTTCCCAGAGGAGTCAATTCTCTTGGCCTTACTTTTCCTGGCTTTATTTATGTCCATAATACCTTTCTACAGAAAGGAAGAACAGAGGCATTCTGGGATGTTCTAAGAAAGTTTGGATATGATAATGATTTAAAACTTCGGGATGATTTCCTTCCGGTTCCGTCTAAGCAGGCTTCTGATCAGAGTATGGAGCTGACAAGTGAAGCTGTAGAGTTTCTAAATGGTATCTTTCGATTATTAGATACAGATAAAGATCGATCTCTACGACCTGCAGAAGTTGAAAAGCTATTTGATGCTGCTCCAGAAAGTCCATGGAATGATGTTCCATATAAGGATGCAGCTGAGAAAACTGACATGGGTTATGTATCTCTCAATGGATTTCTGTCTCAGTGGGCCCTTATGACATTACTTGATCCACGACATAGCTTGGCTAATTTGATTTACATTGGATATAGTGGCAATCCTGCTGCAGCACTCCGTGTCACTCGTAGAAGATCAGTAGATCGCAAGAAGCAACAAACAGAAAGAAATGTGTTCCAATGCTATGTTTTTGGTTCTAAAAATGCCGGGAAATCTGCTTTGCTGTATTCATTATTGGGAAGGCCTTTCTCAAATAATTATACTCCGACAACAGTTGAGCAGTATGCAGCAAATGTTGTGGAATTAAGAGGGGGAACTAAGAAAATTCTCATATTGCGTGAGATACCAGAGGATGGAGTATCAACTTTTTTGTCAAATCAGGATTGTTTGGCTGCATGTGATGTAGCTGCTTTTGTGTACGACAGCTCAGATGAATATTCATGGAAGAAATCCATAGATTTGCTCGAGAAGGTTGTTAGACAAGGAGAGCTAACTGGTTATAGAGTTCCTTGCCTCCTCATTGCTGCTAAGGATGATTTAACTCCATTCCCAAGGGGGGTACTAGATTCAGTTAAGGCTACTCAGGAATTGGGAATAGAGGCACCTATTCACGTAAGTATGAAATTAGGTGATTCAAATAATGTGTATAGTAAGATTGTTAGTGCTGCAGAACACCCTCATTTGAGCATTCCAGAAACTGAGTTTACAAGGAAAAGAAAGCAACACCACCAGTTTCTTCATCATTCTTTTATTTTTGCCTTAGTTGGGGCTGCTATGGCGGTAGCTGGTTTCAAAGTTTGTCGTGCACGTGCAATGAAGAAGAATTCTTCTGCGTAG 2070 0.4275 QNSRCLAQLSRHIYKEQPKLQHKNSDPKGTLLNVHICFSVSSCFATMIGHSSTRSRKEVRIVVAGDADTGKSTLIAAMASESFPESVSSVLPPTRLPHNSFPDSVPLTLIDTPSSLGKQGTRNEELKRADAVVLTYACDEPGSFERLSTYWLPELQNLEVKAPVIVVGCKFDLRDESRPVSLESLTTRIMRQFREIVTCIECSAATLYQVPEVFYFAQKAVLHPVDPLFDYERHALTDRCVRALRRIFVLCDHNMDGALNDEELNEFQVRCFNTPLQPSEIVKIKTIVEEKVPRGVNSLGLTFPGFIYVHNTFLQKGRTEAFWDVLRKFGYDNDLKLRDDFLPVPSKQASDQSMELTSEAVEFLNGIFRLLDTDKDRSLRPAEVEKLFDAAPESPWNDVPYKDAAEKTDMGYVSLNGFLSQWALMTLLDPRHSLANLIYIGYSGNPAAALRVTRRRSVDRKKQQTERNVFQCYVFGSKNAGKSALLYSLLGRPFSNNYTPTTVEQYAANVVELRGGTKKILILREIPEDGVSTFLSNQDCLAACDVAAFVYDSSDEYSWKKSIDLLEKVVRQGELTGYRVPCLLIAAKDDLTPFPRGVLDSVKATQELGIEAPIHVSMKLGDSNNVYSKIVSAAEHPHLSIPETEFTRKRKQHHQFLHHSFIFALVGAAMAVAGFKVCRARAMKKNSSA. 690
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g05790 689 ProSiteProfiles Miro domain profile. 467 636 IPR020860 GO:0003924|GO:0005525
Seca8g05790 689 SMART rab_sub_5 59 224 - -
Seca8g05790 689 ProSiteProfiles Miro domain profile. 56 223 IPR020860 GO:0003924|GO:0005525
Seca8g05790 689 Pfam Ras family 60 221 IPR001806 GO:0003924|GO:0005525
Seca8g05790 689 Pfam Ras family 474 593 IPR001806 GO:0003924|GO:0005525
Seca8g05790 689 FunFam Mitochondrial Rho GTPase 231 335 - -
Seca8g05790 689 ProSitePatterns EF-hand calcium-binding domain. 252 264 IPR018247 -
Seca8g05790 689 PIRSF Miro 55 689 IPR021181 GO:0003924|GO:0005509|GO:0005525|GO:0005741|GO:0007005
Seca8g05790 689 PRINTS Transforming protein P21 ras signature 160 173 - -
Seca8g05790 689 PRINTS Transforming protein P21 ras signature 59 80 - -
Seca8g05790 689 PRINTS Transforming protein P21 ras signature 199 221 - -
Seca8g05790 689 Gene3D - 534 634 IPR027417 -
Seca8g05790 689 ProSiteProfiles EF-hand calcium-binding domain profile. 359 394 IPR002048 GO:0005509
Seca8g05790 689 PANTHER RHO FAMILY GTPASE 471 592 IPR003578 GO:0005525|GO:0007264
Seca8g05790 689 SMART rho_sub_3 61 224 IPR001806 GO:0003924|GO:0005525
Seca8g05790 689 FunFam Mitochondrial Rho GTPase 534 635 - -
Seca8g05790 689 Gene3D - 55 226 IPR027417 -
Seca8g05790 689 Gene3D - 337 527 - -
Seca8g05790 689 FunFam Mitochondrial Rho GTPase 56 226 - -
Seca8g05790 689 Pfam EF hand associated 396 464 IPR013566 -
Seca8g05790 689 SUPERFAMILY EF-hand 227 423 IPR011992 -
Seca8g05790 689 Gene3D - 231 335 - -
Seca8g05790 689 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 466 640 IPR027417 -
Seca8g05790 689 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 56 256 IPR027417 -
Seca8g05790 689 Pfam EF hand associated 274 359 IPR013567 -
Seca8g05790 689 FunFam Mitochondrial Rho GTPase 337 527 - -
Seca8g05790 689 CDD Miro2 466 648 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g05790 Seca-Chr8 150576778 150583905 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g05790 49 687 EF-hand Containing Proteins AT3G63150 58.216 0.0 797
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g05790 K07870 - gmx:100806983 1114.75
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g05790 8 150576778 150583905 Seca2g04234 2 126632328 126639716 PCT