Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g04234 ATGAGCGTGGCCGGTCGTAGTGGCGTTCGAGTCGTCGTCGCCGGTGACCGTGGCACCGGAAAATCAAGCCTGATAGCTGCTATAGCGTCGGAGTCATTCCCCGAGGCCGTTCCGCCCGTGCTTCCGCCCACTCTCTTGCCCTCTGATTTGTACCCTGACAACGTTCCCCTTACAATCGTCGACACATCTTCCAGCTTGGAAAAACAGAGCAAGCGTAATGAAGAATTGAAAAGAGCTGATGCCGTGGTTTTAACATATGCTTGCAATGAGCCCCAGTCATTTTCAAGATTGAGTTCTTACTGGTTCCGTGAATTGCAGAATTTGGAGGTGAAGGTGCCTGTAATTGTGGTTGGTTGCAAGCTAGATCTGCGGGATGAAAGCCAGCAAGTGAGCTTAGAGCGTCTCATGACACAGCTCCTACAAGAGTTCAAGGAAATTGTCACTTGCATAGAATGCTCTGCTGCTACGCTATACCAGGTCCCTGAAGTTTTTTATTTTGCTCAAAAAGCAGTACTACATCCAGTAGATCCATTGTTTGATCATGAAAGTCAAGCTTTAACAGATCGATGTGTTAGGGCATTAAGAAGAATATTTGTTCTCTGCGATCGTGACATGGATGATGCCCTCAATGATGCAGAATTAAACGAGTTTCAGGTTAGATGTTTCAATGCACCACTACAGTCATCTGAAATAGAAGGTGTCAAAACAGTTGTACAGCAGAAAGTACCTGAAGGAATCAACTCACATGGGCTTACTTTTCCAGGATTTATTTATATCCATAATATGTTCTTAAAAAAAGGGCGTCCGGAGACATTATGGGCTGTTCTAAGAAGCTTTGGATATGATAATGATTTAAAACTCCCGGATGATTTCCTTCCGGTTCCATCTAAGAAGGCTTCTGATCAGAGTGTAGAGCTGACAAGTGAAGCTGTGGAGTTTCTAAATGGTATCTTCCGACTAATAGATACAGATAAAGATCGAGCCCTACGGCCTGCTGAAGTTGATAAGCTATTCTGTACTGCTCCAGAAAGTCCATGGAATAATGCTCCATATAAGGATGCTGCTGAGAGAAATGACACGGGTTACATATCTCTTAATGGATTTCTGTCCCAGTGGGCCCTTATGACTTTACTTGACCCACCACGTAGCCTGGCTAATTTGATTTACATTGGATATAGTGGTAATCCTGCTGCAGCACTCCGTGTTACTCGTAGAAGATTAGTAGACCGCAAGAAGCAAGCAACAGAAAGGAATGTGTTTCAATGCTATGTTTTTGGTTCTAAAAATTCTGGGAAATCTGCTCTGTTGGATGCATTATTGGGGAGGCCTTTCTCAAATAATTACACTCCGACAACAGTTGAGAAGTTTGCTGCAAATGCGATTGAATTAATAGGGGGAACTAGAAAAACTCTTGTATTGCGGGAGATACCAGAGGGTGAAGTGTCGAAAGTTTTGTCAAATCAAGATTATTTGGCAGCATGTGATGTAGCTGTTTTTGTGTATGACAGCTCAGATGAATATTCATGGAAGAAATCCAGGGATTTGCTTGAGAAGGTTGCTAGGCAAGGAGATCTAACTGGCTATAGAGTTCCTTGCCTCCTTATTGCTGCTAAGGATGATTTAACTCCATATCCAAGGGCGGTCCAAGATTCGATCAAGGTTACTGAGGAATTGGGAATAGAAGCACCTATTCACGTAAGTATGAAATTAGGTGAATCAAGTAATGTGTACAATAAAATTGTTAGTGCTGCAGAACACCCTCATTTAAGCATTCCAGAAACTGAGATTGGGAGGAAAAGAAAGCAATACCATCGGCTTCTTCAGAACTCCCTTATTTTTGCCTCAGTTGGGACTGCCGTGGCAGTTGTTGGATTAGCAGCATGTCGTGCATATGCAGTGAGGAAGAATTCTTCTGCTTAG 1920 0.4318 MSVAGRSGVRVVVAGDRGTGKSSLIAAIASESFPEAVPPVLPPTLLPSDLYPDNVPLTIVDTSSSLEKQSKRNEELKRADAVVLTYACNEPQSFSRLSSYWFRELQNLEVKVPVIVVGCKLDLRDESQQVSLERLMTQLLQEFKEIVTCIECSAATLYQVPEVFYFAQKAVLHPVDPLFDHESQALTDRCVRALRRIFVLCDRDMDDALNDAELNEFQVRCFNAPLQSSEIEGVKTVVQQKVPEGINSHGLTFPGFIYIHNMFLKKGRPETLWAVLRSFGYDNDLKLPDDFLPVPSKKASDQSVELTSEAVEFLNGIFRLIDTDKDRALRPAEVDKLFCTAPESPWNNAPYKDAAERNDTGYISLNGFLSQWALMTLLDPPRSLANLIYIGYSGNPAAALRVTRRRLVDRKKQATERNVFQCYVFGSKNSGKSALLDALLGRPFSNNYTPTTVEKFAANAIELIGGTRKTLVLREIPEGEVSKVLSNQDYLAACDVAVFVYDSSDEYSWKKSRDLLEKVARQGDLTGYRVPCLLIAAKDDLTPYPRAVQDSIKVTEELGIEAPIHVSMKLGESSNVYNKIVSAAEHPHLSIPETEIGRKRKQYHRLLQNSLIFASVGTAVAVVGLAACRAYAVRKNSSA. 640
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g04234 639 Gene3D - 483 584 IPR027417 -
Seca2g04234 639 ProSiteProfiles small GTPase Rab1 family profile. 1 201 - -
Seca2g04234 639 FunFam Mitochondrial Rho GTPase 287 477 - -
Seca2g04234 639 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 9 206 IPR027417 -
Seca2g04234 639 SMART rab_sub_5 9 174 - -
Seca2g04234 639 ProSitePatterns EF-hand calcium-binding domain. 202 214 IPR018247 -
Seca2g04234 639 ProSiteProfiles Miro domain profile. 6 173 IPR020860 GO:0003924|GO:0005525
Seca2g04234 639 Gene3D - 181 285 - -
Seca2g04234 639 PRINTS Transforming protein P21 ras signature 9 30 - -
Seca2g04234 639 PRINTS Transforming protein P21 ras signature 110 123 - -
Seca2g04234 639 PRINTS Transforming protein P21 ras signature 149 171 - -
Seca2g04234 639 CDD Miro2 416 595 - -
Seca2g04234 639 Gene3D - 6 176 IPR027417 -
Seca2g04234 639 ProSiteProfiles Miro domain profile. 417 586 IPR020860 GO:0003924|GO:0005525
Seca2g04234 639 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 416 590 IPR027417 -
Seca2g04234 639 SMART rho_sub_3 11 174 IPR001806 GO:0003924|GO:0005525
Seca2g04234 639 Pfam EF hand associated 346 413 IPR013566 -
Seca2g04234 639 SMART ras_sub_4 10 174 - -
Seca2g04234 639 PANTHER RHO FAMILY GTPASE 421 583 IPR003578 GO:0005525|GO:0007264
Seca2g04234 639 Gene3D - 287 477 - -
Seca2g04234 639 FunFam Mitochondrial Rho GTPase 484 585 - -
Seca2g04234 639 SUPERFAMILY EF-hand 187 381 IPR011992 -
Seca2g04234 639 FunFam Mitochondrial Rho GTPase 181 285 - -
Seca2g04234 639 Pfam EF hand associated 225 309 IPR013567 -
Seca2g04234 639 PIRSF Miro 5 639 IPR021181 GO:0003924|GO:0005509|GO:0005525|GO:0005741|GO:0007005
Seca2g04234 639 FunFam Mitochondrial Rho GTPase 6 176 - -
Seca2g04234 639 Pfam Ras family 10 171 IPR001806 GO:0003924|GO:0005525
Seca2g04234 639 Pfam Ras family 424 549 IPR001806 GO:0003924|GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g04234 Seca-Chr2 126632328 126639716 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g04234 2 637 EF-hand Containing Proteins AT3G63150 60.692 0.0 824
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g04234 K07870 - gmx:100803790 1107.05
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g05790 8 150576778 150583905 Seca2g04234 2 126632328 126639716 PCT