Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g05709 ATGGCAACTATCTCTGCTACTACCACAACTCCATCGATCACCCGTGCAGGTCTTGTGCAAAAGCGATCTCTTGTGGTTTCATCATCTCCCGTTCTTGGTTTGCCAGCAATGGCTAAGATGGGAAGAGTGAGGTGCTCCATGGAGGGAAAGCCTTCTGTGCAGGAAAGCAAATCATCAAACATGGGAATGGGGGCATCTTTGGTAGCAGCTGCCTGCGCTGCGGCCATGTCAAGCCCAGCCATGGCATTGGTGGATGAGAGAATGAGCACTGAAGGAACAGGGCTTCCCTTTGGGCTCAGCAACAACCTTCTTGGTTGGATCCTTTTTGGTGTCTTTGGTCTTATTTGGACTCTCTATATTGTCTATGTTTCGGGTCTTGATGAGGATGAAGAGTCAGGATTGTCCCTTTAG 411 0.4939 MATISATTTTPSITRAGLVQKRSLVVSSSPVLGLPAMAKMGRVRCSMEGKPSVQESKSSNMGMGASLVAAACAAAMSSPAMALVDERMSTEGTGLPFGLSNNLLGWILFGVFGLIWTLYIVYVSGLDEDEESGLSL. 137
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g05709 136 Pfam Photosystem II reaction centre W protein (PsbW) 1 136 IPR009806 GO:0009507|GO:0009523|GO:0015979
Seca8g05709 136 PANTHER PHOTOSYSTEM II REACTION CENTER W PROTEIN, CHLOROPLASTIC 1 136 IPR009806 GO:0009507|GO:0009523|GO:0015979
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g05709 Seca-Chr8 148941427 148942397 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g05709 K02721 - cave:132166109 185.652
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g05709 8 148941427 148942397 Seca2g04324 2 127933137 127933998 PCT