Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g05697 ATGGTAATGGTTTCTGCAAAAGAAGAGCCAGACCGCCCCATACCGCCAGCTGTGGAGGGTCTGTTAAGGGTTCATAAACAAGTTGTCAACGTGGACCGCGATCCTGTAGATAGTGCATCAGCTGCAGGACGACCAGTTATTACAAGGCTTCTAGTGGCAGATACTCAAGCAGGAAGCTTGATTGGGAAGCAGGGTTCCACTATAAAATCCTTTCAAGATGCCACAGGATGCAATATTCGCGTTCTTGGTTCAGAACACCTGCCAGTTTTTGCTCTGCGAGATGATAGTGTTGTTGAAATACAAGGGGAATCTGCTGGGGTTCACAAGGCAGTTGAACTTGTTGCAATTCATCTACGTAAATTCTTGGTTGATCGCAGCATAGTTGGAGTATTTGAAACACAAATGCAAAGGCCAGATGTTCGAGTTAACCAGAATGTACCACCACACCAGCCTTGGGGTCCTCCTCCGCAAGGGTTTCCGGCTCCTGGCAGTGGTGGTGGACCTGCTTTTCCTCCCAATCCTCAATATATGCCACCATCACATAACTATGATAATTACTACCCACCTGCTGACCTGCCTCCCATGGACAAGCATCTCCATCAGGGTCCACCACCGGCCTATGGAAGGGATGCATCTATGGGAATTCATTCATCCAGTGCACAGCCACAACAATCTGTTGTGACTAAGGTCACACAGCACATGCAAATTCCTCTGTCCTATGCTGATGCTGTTATTGGAGCATCAGGAGCAAATATTAGCTACATCCGACGAGCTAGCGGAGCAAGTATTACAATTCAAGAGACCAGGGGTGTGCCAGGGGAGATGACTGTCGAGATAAGTGGTACTGCTTCACAAATACAGGCAGCCCAACAACTGGTGCAGGTATTTGATTTTAAAAATTTCATGGCTGAAGCTGCAAGTGCGGCACAGGATCATATGGGGGGATCAATTAACCAAGGTTACAATTCCTATCCTACTAATGCTCCTGTTTATGCATCTCCACCATCAAGCGCTGGTGGTCATGCAGGCCATGCACCTTCTGCAGATTATGGTCCCGTATATGGCACCAATTATGGCTATTGA 1083 0.4755 MVMVSAKEEPDRPIPPAVEGLLRVHKQVVNVDRDPVDSASAAGRPVITRLLVADTQAGSLIGKQGSTIKSFQDATGCNIRVLGSEHLPVFALRDDSVVEIQGESAGVHKAVELVAIHLRKFLVDRSIVGVFETQMQRPDVRVNQNVPPHQPWGPPPQGFPAPGSGGGPAFPPNPQYMPPSHNYDNYYPPADLPPMDKHLHQGPPPAYGRDASMGIHSSSAQPQQSVVTKVTQHMQIPLSYADAVIGASGANISYIRRASGASITIQETRGVPGEMTVEISGTASQIQAAQQLVQVFDFKNFMAEAASAAQDHMGGSINQGYNSYPTNAPVYASPPSSAGGHAGHAPSADYGPVYGTNYGY. 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g05697 360 MobiDBLite consensus disorder prediction 148 178 - -
Seca8g05697 360 Gene3D K Homology domain, type 1 42 120 IPR036612 GO:0003723
Seca8g05697 360 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 2 325 - -
Seca8g05697 360 CDD KH-I_PEPPER_rpt2_like 47 119 - -
Seca8g05697 360 Pfam KH domain 48 114 IPR004088 GO:0003723
Seca8g05697 360 Pfam KH domain 231 294 IPR004088 GO:0003723
Seca8g05697 360 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 220 294 IPR036612 GO:0003723
Seca8g05697 360 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 40 127 IPR036612 GO:0003723
Seca8g05697 360 CDD KH-I_PEPPER_like_rpt3 229 296 - -
Seca8g05697 360 SMART kh_6 44 119 IPR004087 GO:0003676
Seca8g05697 360 SMART kh_6 228 298 IPR004087 GO:0003676
Seca8g05697 360 MobiDBLite consensus disorder prediction 144 225 - -
Seca8g05697 360 Gene3D K Homology domain, type 1 216 297 IPR036612 GO:0003723
Seca8g05697 360 ProSiteProfiles Type-1 KH domain profile. 229 293 - -
Seca8g05697 360 ProSiteProfiles Type-1 KH domain profile. 45 114 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g05697 Seca-Chr8 148722642 148729261 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g05697 K21444 - gmx:100818363 585.874
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g05697 8 148722642 148729261 Seca2g04338 2 128192080 128197156 PCT