Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g04338 ATGGTTTCTGCCAAAGAAGAGCCAGATCGCCCCATCCCACCTGCTGTTGATGGTTTGTTAAGGGTTCATAAACAAGTTATTAATGTTGATGGTGACCCTGCAGATAGTGCATTGGGTGCTGGACGCCCAGTTGTCACCAAGCTTCTAGTGGCAGACACTCAAGCAGGGAGCTTAATTGGGAAGCAGGGCTCAACCATAAAATCCATTCAAGATGCCTCTGGTTGCACTATACGGGTTCTTGGTTCAGAAAACCTGCCTGTTTTTGCTTTGCGAGATGATAGTATTGTTGAAATACAAGGGGAATCTGCCAGTGTTCACAAGGCAGTTGAACTTATTGCTGTTCATCTACGTAAGTTCTTGGTTGACCGCAGCATAGTTGGAGTTTTTGAAATGCAAATGCAAATGCCAAATGCTCGAGTTAACCAGAATGTGCCACCACACCAAACTTGGGGCCATCCTCCTCAAGGGTTTCAAGCTCCTGGTGGTGGTAGTGGGCCTGCTTTTGCACCCAGTCATCATCAATATATGCCACCTTCACATCACTATGATAATTATTACCCACCTGCTGACCTGCCTCCCATGGACAAGCACCCTTATCAGGATCCACCACCTGCTTATGCAAGGGATGCTTCTCTGGGAATTCATTCCTCTAGCATGCAGCCGCAACAATCTATTGTAACTGAGATCACACAGCACATGCAAATTCCTCTTGCATATGCGGATGCTGTTATTGGAGCATCAGGCACAAATATCAGCTACATTCGTCGTGTTAGTGGAGCAAGTATTACAATTCAGGAGACAAAGGGTGTTCCAGGGGAGATGACTGTGGAGATGAGTGGGACTTCTTCTCAAATACAGGCAGCCCAACAGCTGGTTCAGGTATTTGCTTTTAAAGGCAAATCTTGTATTCTCCTTGTTACCTGTATTGTTGTTGGCAAAGTGTCAAAAGTCTATGGTGCACCACCTGAATTTAATTTCATGGCTGAAGCTTCAACTAAGACACAGGATAATATGGGCGGTTCAGTTAGCCAAGGTTACAATGCCTATCCAACTAATGCTCCTATTTATGCATCTCAACCCTCAAGCGCTGGTGGTGATACAGGCCATGTGCCTTCTGCAGATTATGGCTCCGTATATGGTACCAATTATGGCTATTAA 1158 0.4542 MVSAKEEPDRPIPPAVDGLLRVHKQVINVDGDPADSALGAGRPVVTKLLVADTQAGSLIGKQGSTIKSIQDASGCTIRVLGSENLPVFALRDDSIVEIQGESASVHKAVELIAVHLRKFLVDRSIVGVFEMQMQMPNARVNQNVPPHQTWGHPPQGFQAPGGGSGPAFAPSHHQYMPPSHHYDNYYPPADLPPMDKHPYQDPPPAYARDASLGIHSSSMQPQQSIVTEITQHMQIPLAYADAVIGASGTNISYIRRVSGASITIQETKGVPGEMTVEMSGTSSQIQAAQQLVQVFAFKGKSCILLVTCIVVGKVSKVYGAPPEFNFMAEASTKTQDNMGGSVSQGYNAYPTNAPIYASQPSSAGGDTGHVPSADYGSVYGTNYGY. 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g04338 385 SMART kh_6 227 297 IPR004087 GO:0003676
Seca2g04338 385 SMART kh_6 42 117 IPR004087 GO:0003676
Seca2g04338 385 CDD KH-I_PEPPER_like_rpt3 228 295 - -
Seca2g04338 385 MobiDBLite consensus disorder prediction 152 204 - -
Seca2g04338 385 Gene3D K Homology domain, type 1 43 119 IPR036612 GO:0003723
Seca2g04338 385 ProSiteProfiles Type-1 KH domain profile. 228 292 - -
Seca2g04338 385 ProSiteProfiles Type-1 KH domain profile. 43 112 - -
Seca2g04338 385 Pfam KH domain 46 112 IPR004088 GO:0003723
Seca2g04338 385 Pfam KH domain 230 293 IPR004088 GO:0003723
Seca2g04338 385 CDD KH-I_PEPPER_rpt2_like 45 117 - -
Seca2g04338 385 Gene3D K Homology domain, type 1 215 300 IPR036612 GO:0003723
Seca2g04338 385 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 2 345 - -
Seca2g04338 385 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 34 126 IPR036612 GO:0003723
Seca2g04338 385 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 218 294 IPR036612 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g04338 Seca-Chr2 128192080 128197156 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g04338 K21444 - gmx:100799901 564.688
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g05697 8 148722642 148729261 Seca2g04338 2 128192080 128197156 PCT