Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g05542 ATGACTTGTGCTGCTCGTTTGGGCTTAAAGCCAAGGATTATTTCTAAGGTTGCAAACGATGCTCAGGGTAAGGCTTTGCTGGAGGAGCTACAACATGATGGGGTCGATACTTCTTTTTTTGTGGTTTCCAAGGAAGGGACTACCTCATTTAGCTACATTATTGTTGACAGCCAGACGAAAACACGCACTTGTATATTCACCGCAGGATATCCTCTAATGGTACCAGAAGATCTTCCACGAGAAAGTTTGTTATCTGCATTGGATGGAGCTAGAGTTGTTTATTTTGATGTAAGGATGCCTGAAACTGCTCTTCTCATTGCTCAAGAGGCATTTCACCAGAATATATCTATCTTAGTTGATGCTGAAAGGCCAAGGGAAGGATTGAACGAGCTCCTTGAAATGGCTGATTATGTTGTATGCTCAGAAAAATTTCCACAGGCCTGGACAGAGACATCATCTATTCCAAGAGGACTAGTTTCAATTATTTTAAGACTGCCAAGACTTAAATTTGTGATTGCAACTTTAGGAAAAGATGGCTGCATAATGCTTGAGAAATGTGTGGATGAAGGTTCTCACTTAGAAGAAATGGATGTGGACTGCGCTTTGAAATCATTAACAATGAAAAAGGACAATAGCATAGCCATGCCAACTTGCATTGCCTCGTCTGTTACAAAATTTAGAGCAGAAGGGATAGGAACCCTGTGTGGGAGGTTATATTTAGGGACAGCTGAAAAGATTCCACCATCAGAGCTTATTGATACAACTGGTGCTGGAGATGCATTTGTTGGAGCTGTTTTATATGCGATCTGTGCCAACTTCTCACCAGAGAAAATGTTGCCATTTGCTTCATATGTGGCTGCTACCAATTGTAAAGCTCTTGGAGCTAGGAGTGGTCTTCCATACCGCACTGATACTTTGCTAAGTACAGCCCTAATTCAGCCATCAAAATCTTCTGCATAG 960 0.4156 MTCAARLGLKPRIISKVANDAQGKALLEELQHDGVDTSFFVVSKEGTTSFSYIIVDSQTKTRTCIFTAGYPLMVPEDLPRESLLSALDGARVVYFDVRMPETALLIAQEAFHQNISILVDAERPREGLNELLEMADYVVCSEKFPQAWTETSSIPRGLVSIILRLPRLKFVIATLGKDGCIMLEKCVDEGSHLEEMDVDCALKSLTMKKDNSIAMPTCIASSVTKFRAEGIGTLCGRLYLGTAEKIPPSELIDTTGAGDAFVGAVLYAICANFSPEKMLPFASYVAATNCKALGARSGLPYRTDTLLSTALIQPSKSSA. 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g05542 319 Gene3D - 1 297 IPR029056 -
Seca8g05542 319 Pfam pfkB family carbohydrate kinase 2 187 IPR011611 -
Seca8g05542 319 Pfam pfkB family carbohydrate kinase 244 300 IPR011611 -
Seca8g05542 319 PANTHER PHOSPHOTRANSFERASE SYSTEM TRANSPORT PROTEIN 1 310 - -
Seca8g05542 319 ProSitePatterns pfkB family of carbohydrate kinases signature 2. 253 266 IPR002173 GO:0016301
Seca8g05542 319 SUPERFAMILY Ribokinase-like 2 303 IPR029056 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g05542 Seca-Chr8 146830429 146836487 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g05542 - - gmx:100784774 495.352
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g05542 8 146830429 146836487 Seca8g05542 8 146830429 146836487 ECH
Seca8g05542 8 146830429 146836487 Seca8g05541 8 146821018 146827562 PCT