Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g05541 ATGAGAACAAGAAAGAACTCAAGAAGAAGCAATTTTTCAATCTCAATCAAAAAGGCGCCACTAACCAAAACCATGTCAAACCTCTGCACTCTTCCCAATGCTTCTTCTTCAACCTTCATATTCAACGTTCATGCTCATTCACCACTTCTCAATTTCTACAATTTTCAGTCAAGAAAGGCTCGCTGCAGAAACTTGAGGGCTAGTTTGTGCTCCAATCCTCAAAACGCCATCGTTGTTGGTTGTGGAGCGGTGTCCGTCGATTTCTTGGCTACCGTTGCTGCTTACCCTAAGCCAGATGACAAAATCAGAAGCACCAGCTTGAAGGTTCAAGGAGGTGGTAATACGGGCAATGCCTCAACCTGCCTTGCTCGCTTGGGCCTAAACCCAAGGGTTATCTCCAAGGTTGCAGATGACAGTCAAGGCAGGGGCATATTAGATGAGCTACAGGCTGATGGTGTAGATACATCCTTTATTGTGGTATCTGAAGAGGGAACTTCACCATTTACATATATTATTGTGGACAACGAAACGAAGACCCGTACTTGTATACATACCCCAGGATATCCTCCAATGATACCAGACGATCTTTCAGAATCAAGTTTGTTATCTGCAATGGATGGAGCAAGCATTGCATATTTTGATGGGAGGTTGCATGAAACTGCTATAGTTGTTGCTCATGAGGCAGCTAGGAGGAATATACCCATCTTAATTGATGCAGAAAGGCCAAGGGAAGGGTTGGATGATCTCCTGAAATTAGCTGATTATGTTGTATGCTCAGCGAAGTTTCCAAAGGCATGGACAGAGGCATCAACTGTTCCACAAGCACTTGTTTCTATGCTTTTAAGGCTGCCCAACATCAAATTTGTGATTGTGACTTTGGGAAAAGATGGTTGTATAATGCTTGAAAGAAGTGTTGATGCAGGCCCTTCCATGGAAGAAGTGGATGTAGACAGCTTATTGGAATCACTGGAGTTAAGAAAGAATAAGAGTGTATCCATTCCAACCTGCATATCATCATCAGTGGCAAAACTGAAGGCAGAAGGGATAGGAACGGTTAGTGGGAAGTTATACGTTGGAACAGCCGAGAGCATTCCACCATCAGAGCTTATTGATACCACTGGTGCTGGGGATGCATTTATTGGAGCTGTTATCTATGCTATATGTTCGAAGTTTTCCCCAGAGACAATGCTATCCTTTGCAGCTAATGTGGCTGGTGCCAAGTGCAGAGATCTGGGAGCACGAAGTGGTCTTCCTTACCGTGCAGACCCACGTTTAGCATCCTTTATTCAGTAG 1293 0.4408 MRTRKNSRRSNFSISIKKAPLTKTMSNLCTLPNASSSTFIFNVHAHSPLLNFYNFQSRKARCRNLRASLCSNPQNAIVVGCGAVSVDFLATVAAYPKPDDKIRSTSLKVQGGGNTGNASTCLARLGLNPRVISKVADDSQGRGILDELQADGVDTSFIVVSEEGTSPFTYIIVDNETKTRTCIHTPGYPPMIPDDLSESSLLSAMDGASIAYFDGRLHETAIVVAHEAARRNIPILIDAERPREGLDDLLKLADYVVCSAKFPKAWTEASTVPQALVSMLLRLPNIKFVIVTLGKDGCIMLERSVDAGPSMEEVDVDSLLESLELRKNKSVSIPTCISSSVAKLKAEGIGTVSGKLYVGTAESIPPSELIDTTGAGDAFIGAVIYAICSKFSPETMLSFAANVAGAKCRDLGARSGLPYRADPRLASFIQ. 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g05541 430 Gene3D - 77 415 IPR029056 -
Seca8g05541 430 PANTHER PHOSPHOTRANSFERASE SYSTEM TRANSPORT PROTEIN 64 429 - -
Seca8g05541 430 CDD ribokinase_group_B 77 419 - -
Seca8g05541 430 PRINTS Ribokinase signature 107 126 IPR002139 GO:0016301
Seca8g05541 430 PRINTS Ribokinase signature 289 300 IPR002139 GO:0016301
Seca8g05541 430 PRINTS Ribokinase signature 80 101 IPR002139 GO:0016301
Seca8g05541 430 ProSitePatterns pfkB family of carbohydrate kinases signature 2. 371 384 IPR002173 GO:0016301
Seca8g05541 430 Pfam pfkB family carbohydrate kinase 81 303 IPR011611 -
Seca8g05541 430 Pfam pfkB family carbohydrate kinase 356 418 IPR011611 -
Seca8g05541 430 SUPERFAMILY Ribokinase-like 78 422 IPR029056 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g05541 Seca-Chr8 146821018 146827562 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g05541 - - gmx:100802550 665.996
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g05542 8 146830429 146836487 Seca8g05541 8 146821018 146827562 PCT