Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g05522 ATGGAGGAAGCGCTGGAGCTCGCACGCGCGAAGGACGCGAAGGAGAGGATGGCGGGCGTGGAGCGCCTCCACCAAGTTCTGGAAGCTTCTAGAAGGAGCCTCAGTTCCAGCGAGGTCACTTCCCTCGTCGATTGTTGCTTGGATCTCTTGAAGGACAGCAGCTTCAGGGTCTCCCAGGGTGCGCTTCAAGCATTGGCCTCCGCCGCCGTTCTCTCCGGCGACCACTTCAAGCTTCACTTCAACGCGCTTGTTCCCGCTGTCGTCGACCGCTTAGGCGATGCCAAACAGCCTGTCCGCGACGCCGCCAGAAGGCTCTTGCTCACTCTCATGGAGGTTTCATCTCCTACAATAATTGTTGAAAGAGCAGGGTCCTTTGCTTGGACATGCAAAAGCTGGAGAGTCAGAGAGGAGTTTGCACGAACTGTCACATCTGCGATTGGTCTATTTTCATCTACTGAACTTCCTCTTCAACGGGCTATTCTTCCTCCCATTTTACAGTTGCTGAGTGATCCAAATTCCGCTGTTAGGGAAGCAGCTATTTTGTGCATTGAGGAGATGTATGCACAAGCTGGGTCTCAATTTCGTGATGAACTCCAACGCCACAATCTTCCTTCTTCTTTGGTGAAGATTATTAATGCCAGACTAGAGGGGATTCAACCAAAAGTTCAGTCTACAGATGGTATTTCTAGTGGTTTTATTGCTGGGGAAATTAATCCTTTGAGTGTTAATCCCAAGAAAAGCAGTCCTAAGACTAAAAGTTCATCAAGGGAGACCTCACTTTTTGGAGGAGAAGGTGATGTCACAGAGAAAGCCATAGACCCTATTAAGGTGTATTCAGAGAAGGAGTTAGTCAGGGAAATGGAGAAGATTGCATCCACTCTTGTACCAGAAAAAGACTGGTCAATTCGTATTGCTGCCATGCAGAGAATCGAAGGCCTTGTTCTTGGAGGTGCTGCTGATTATCCATGTTTTGGTGGACTCCTGAAGCAGCTTGTTGGACCTTTGAGCACGCAATTATCAGATAGAAGGTCTACCATTGTGAAGCAGGCTTGCCATCTATTATGCTTTTTGTCAAAGGACTTCTTGGGTGATTTTGAAGCATGTGCTGAAATGTTCATACCAGTTCTTTTGAAGCTGGTTGTGATTACTGTGCTTGTAATTGCAGAGTCTGCAGATAACTGCATAAAAACGATGTTGCGCAACTGCAAAGTTGCTCGCGTGATTCCTCGAATAGCTGATTGTGCAAAAAATGATCGAAGTGCAATACTTCGTGCAAGGTGTTGTGATTATGCTCTTTTGATACTAGAACATTGGCCTGATGCACCAGAAATACAACGATCAGCTGATTTATATGAGGATATGATAAGGTGTTGTGTTTCAGATGCAATGAGCGAGGTACGGTCGACTGCAAGGATGTGCTACAGAATGTTTGCAAAAACTTGGCCAGAGCGTTCCCGTCGCCTGTTTTCATCATTTGACCCTTCTATTCAAAGGTTAATAAATGAAGAGGATGGAGGAAAACATAGGCGGCACGCGTCACCTAGCATTCGTGATAGAAGTGCTCTGATGTCATTAACTAGTCAAACTTCAGCTCCGTCTAATCTAACTGGTTATGGAACTTCTGCTATTGTTGCAATGGACAGAAGTTCGAGTTTATCATCAGGGACTACTGTTTCCTCTGGTGTTCTTCTTTCACAGGCTAAGTCACTTGGTAAAGGTACAGAACGTAGTTTGGAAAGTGTGTTGCATGCAAGCAAACAGAAGGTCTCTGCTATTGAAAGCATGCTTAGAGGTTTGGATTTGTCTGATAGGCACCATTCTTCTGCTCTCCGGTCTTCAAGTTTGGATCTAGGAGTTGACCCTCCCTCATCTCGTGATCCACCATTCCCTGCATCTGTTTCAGCATCTAATCATCTGACTGGCTCTTTAACAACAGAATCAACAGCTTCTGGTGTCAGTAAAGGTAGTAACCGGAATGGTGGTTTGGGTTTGTCTGACATAATCACCCAAATTCAAGCTTCCAAAGATTCTGCTAAGTTATCATATAATAGTAGTGTTGGTATTGAGCCTTTATCAGCCTTTTCATCATACACAAGTAAAAGGGCTACGGAAAGAATACAAGAAAGAAGTTTTGTTGATGAAAACGGTGACATCCGGGAGCCCAGGCGACATATGAACCCCAACATAGACAGGCAGTATATGGATACCCCTTATAGAGATGGAAACTATAGGGATTCACATAATAGTTATGTGCCTAATTTCCAGAGGCCGCTATTGAGAAAGAATGTAGCTGCACGCGTGTCTGCTGGCAGGAGGAGGAGTTTTGATGATAGTCAATTATCTCTTGGAGAGATGTCAAATTATGCAGATGGACTGGCATCTCTTCATGAAGCTCTGAGCGAAGGACTTAGTTCAGGTTCTGACTGGTCTGCTAGGGTTGCTGCCTTTAATTATCTTAACTCTTTGTTGCAGCAAGGTCAAAAGGGAATTCAAGAAGTAATCCAGAATTTTGAGAAGGTAATGAAGTTATTTTTTCAGCACTTGGATGATCCCCATCACAAAGTTGCACAGGCTGCTCTTTCCACACTTGCAGAAATTATTCTTAAATGCCGAAAGCCCTTTGAGGGTTATATGGAGCGTATGTTACCCCATGTGTTTTCTAGATTAATTGACCCCAAAGAGCTTGTTAGGCAAGCATGCTCCACGACTTTGGAAGTTGTTAGCAAAACATACAGTGTAGATTCTCTCTTACCTGCATTGCTGCGCTCACTGGATGAACAAAGGTCTCCAAAGGCAAAATTGGCTGTTATTGAATTTGCAATCAGTTCTTTTAACAAGCATGCAATGAATCCAGAAGGTGCTGCTAATATTGGCATCCTAAAATTATGGCTTGCTAAGTTAGCCCCATTGGTTCATGATAAAAATACTAAGCTTAAAGAAGCAGCTATTACATGCATTATATCAGTGTACTCTCACTATGATTCATCTGCAGTTTTGAATTTTATTCTTAGTCTGTCAGTTGATGAACAAAATTCTTTGAGACGAGCCCTTAAACAGCGCACCCCTCGCATTGAAGTAGACTTAATGAACTATCTGCAGAGCAAGAAAGAGCGACGTTCTAAGTCTTCCTATGATCCATCCGATGTTGTGGGAACATCCTCTGAAGAGGGATATGCTGGTTTGTCTAGGAAGACACATTACCTTGGAAGGTATTCTGCTGGTTCTCTAGATGGTGATGGTGGCAGGAAGTGGAGTTCCCAAGATTCAACCCTGATTAAAGCCAGTCTTGGTCAACCAGCTTCTGATGAAACTGAGGAACAGTTGTATCAGAATCTTCAGATTGATTCTAATAGTGCTCTTGGTTCAAAAACTAAAGATTTTGCTTACACAGTCAATTCAATGGATCAAAATTTTGGCTTACATGTGGACAGTAGCATGAACTTCGAAGGTCTGTCATCTGATCTGGAAGTTAATGGTCTGATGTCATTAGAAAATTTAAACAGTTCTGAAGGCTTTGGACATGACAAAGAACATCCTTCGGAATTGGACCATGATCATCACTCAGCTGAAGAAGTGAAGGTTAAATCCATGGCAGACACAGGACTCAGCATTCCTCAAATTCTTCTTATGATATGTAGTGGGGGTGATGGAAGTTCTATTTCAAGTAAGCAGACTGCACTTCTGCAGCTAGTTGAAGCTTCTATAGCAAATGATCATTCTGTTTGGACCCAGTACTTCAATCAGATTTTGACAGTTGTGCTTGAGGTGCTGGATGATTCAGATTCCTCAATCAGAGAGCTTGCCCTTTCATTGATAGTTGAAATGCTTAAAAACCAGAAAGATTCCATGGAAAATTCAGTTGAGATTGTAGTTGAAAAGCTGCTTAATGTTACCAAGGATATTGTTCCCAAGGTCTCTAATGAAGCGGAACACTGCTTGACCATCATTTTATCTCAACACGATCCATTCAGATGTTTAAGTGTTATTGTCCCTCTACTAGTTACTGAGGATGAGAAAACTCTTGTCACCTGCATAAATTGCTTGACAAAGCTTGTGGGGCGGCTCTCTCAGGAGGAACTGATGGCTCAGTTACCCTCATTTCTGCCTGCTTTGTTTGAAGCTTTTGGAAACCAGAGTGCTGATGTTCGTAAGACTGTTGTTTTCTGTCTAGTGGATATTTATATCATGCTTGGGAAAGTATTCTTGCCATATTTGCAAGGGCTTAACAGCACACAGTTGAAGTTGGTCACCATTTATGCAAATCGAATCTCACAGGCAAGGACAGGAAAATCAATTGATGCTGCTCATGATTAG 4314 0.4307 MEEALELARAKDAKERMAGVERLHQVLEASRRSLSSSEVTSLVDCCLDLLKDSSFRVSQGALQALASAAVLSGDHFKLHFNALVPAVVDRLGDAKQPVRDAARRLLLTLMEVSSPTIIVERAGSFAWTCKSWRVREEFARTVTSAIGLFSSTELPLQRAILPPILQLLSDPNSAVREAAILCIEEMYAQAGSQFRDELQRHNLPSSLVKIINARLEGIQPKVQSTDGISSGFIAGEINPLSVNPKKSSPKTKSSSRETSLFGGEGDVTEKAIDPIKVYSEKELVREMEKIASTLVPEKDWSIRIAAMQRIEGLVLGGAADYPCFGGLLKQLVGPLSTQLSDRRSTIVKQACHLLCFLSKDFLGDFEACAEMFIPVLLKLVVITVLVIAESADNCIKTMLRNCKVARVIPRIADCAKNDRSAILRARCCDYALLILEHWPDAPEIQRSADLYEDMIRCCVSDAMSEVRSTARMCYRMFAKTWPERSRRLFSSFDPSIQRLINEEDGGKHRRHASPSIRDRSALMSLTSQTSAPSNLTGYGTSAIVAMDRSSSLSSGTTVSSGVLLSQAKSLGKGTERSLESVLHASKQKVSAIESMLRGLDLSDRHHSSALRSSSLDLGVDPPSSRDPPFPASVSASNHLTGSLTTESTASGVSKGSNRNGGLGLSDIITQIQASKDSAKLSYNSSVGIEPLSAFSSYTSKRATERIQERSFVDENGDIREPRRHMNPNIDRQYMDTPYRDGNYRDSHNSYVPNFQRPLLRKNVAARVSAGRRRSFDDSQLSLGEMSNYADGLASLHEALSEGLSSGSDWSARVAAFNYLNSLLQQGQKGIQEVIQNFEKVMKLFFQHLDDPHHKVAQAALSTLAEIILKCRKPFEGYMERMLPHVFSRLIDPKELVRQACSTTLEVVSKTYSVDSLLPALLRSLDEQRSPKAKLAVIEFAISSFNKHAMNPEGAANIGILKLWLAKLAPLVHDKNTKLKEAAITCIISVYSHYDSSAVLNFILSLSVDEQNSLRRALKQRTPRIEVDLMNYLQSKKERRSKSSYDPSDVVGTSSEEGYAGLSRKTHYLGRYSAGSLDGDGGRKWSSQDSTLIKASLGQPASDETEEQLYQNLQIDSNSALGSKTKDFAYTVNSMDQNFGLHVDSSMNFEGLSSDLEVNGLMSLENLNSSEGFGHDKEHPSELDHDHHSAEEVKVKSMADTGLSIPQILLMICSGGDGSSISSKQTALLQLVEASIANDHSVWTQYFNQILTVVLEVLDDSDSSIRELALSLIVEMLKNQKDSMENSVEIVVEKLLNVTKDIVPKVSNEAEHCLTIILSQHDPFRCLSVIVPLLVTEDEKTLVTCINCLTKLVGRLSQEELMAQLPSFLPALFEAFGNQSADVRKTVVFCLVDIYIMLGKVFLPYLQGLNSTQLKLVTIYANRISQARTGKSIDAAHD. 1438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g05522 1437 SMART TOG_3 282 514 IPR034085 -
Seca8g05522 1437 SMART TOG_3 784 1029 IPR034085 -
Seca8g05522 1437 SMART TOG_3 3 224 IPR034085 -
Seca8g05522 1437 SMART TOG_3 1193 1429 IPR034085 -
Seca8g05522 1437 MobiDBLite consensus disorder prediction 612 660 - -
Seca8g05522 1437 MobiDBLite consensus disorder prediction 1170 1188 - -
Seca8g05522 1437 ProSiteProfiles HEAT repeat profile. 83 121 IPR021133 -
Seca8g05522 1437 SUPERFAMILY ARM repeat 6 402 IPR016024 -
Seca8g05522 1437 Gene3D - 267 509 IPR011989 -
Seca8g05522 1437 Coils Coil 1273 1293 - -
Seca8g05522 1437 Gene3D - 1218 1429 IPR011989 -
Seca8g05522 1437 Gene3D - 1 222 IPR011989 -
Seca8g05522 1437 MobiDBLite consensus disorder prediction 243 261 - -
Seca8g05522 1437 Pfam CLASP N terminal 285 500 IPR024395 -
Seca8g05522 1437 Pfam CLASP N terminal 803 997 IPR024395 -
Seca8g05522 1437 Pfam Vacuolar 14 Fab1-binding region 1223 1310 - -
Seca8g05522 1437 MobiDBLite consensus disorder prediction 1166 1188 - -
Seca8g05522 1437 SUPERFAMILY ARM repeat 290 1427 IPR016024 -
Seca8g05522 1437 FunFam Protein peg1 266 513 - -
Seca8g05522 1437 Pfam HEAT repeat 160 187 IPR000357 GO:0005515
Seca8g05522 1437 MobiDBLite consensus disorder prediction 629 660 - -
Seca8g05522 1437 ProSiteProfiles HEAT repeat profile. 160 198 IPR021133 -
Seca8g05522 1437 PANTHER CLASP 32 1423 - -
Seca8g05522 1437 Coils Coil 10 30 - -
Seca8g05522 1437 MobiDBLite consensus disorder prediction 243 262 - -
Seca8g05522 1437 Gene3D - 797 1021 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g05522 Seca-Chr8 146592034 146613414 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g05522 K16578 - gmx:100801377 2416.34
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g05522 8 146592034 146613414 Seca8g05522 8 146592034 146613414 ECH
Seca8g05522 8 146592034 146613414 Seca2g04481 2 130419512 130434782 PCT