Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g04481 ATGGAGGAAGCGCTGGAACTAGCACGCGCCAAGGACACGAAGGAGAGGATGGCGGGCGTGGAGCGTCTCTACCAACTTCTAGAAGCTTCTAGAAAGAGCCTCTCCTCCTCTGAGGTCACCTTACTCGTCGATTCCTGCTACGATCTCTTGAAGGACAACAACTTCCGCATCTCACAGGGCGCACTCCAAGCACTCGCCTCCGCCGCTGTTCTCTCCGGCGAACACTTCAAGCTACACTTCAACGCCCTCCTTCCTGCCGTCGTTGACCGCCTCGGCGACGCCAAACAGCCTGTTCGCGACGCCGCGAGACGACTCTTGCTCACTCTCATGGAGGTTTCTTCTCCGACAATAATTGTTGAAAGAGCAGGGTCCTGGGCTTGGGCACACAAAAGCTGGAGAGTCAGAGAGGAGTTTACACGAACTGTCACATCTGCAATTAATCTATTTGCATCTACCGAGCTTCCACTTCAACGGGCCATTCTTCCTCCTGTTTTGCATTTGCTGAATGATCCAAATCCTGCTGTTAGGGAAGCAGCTATTTTGTGCATTGAGGAGATGTATACACAAGCTGGGCCTCAATTTCGTGATGAACTTCACCGCCACAATCTTCCTTCATCTTTGGTAAAAGATATTAATGCCAGGCTAGAGGGAATTCAACCAAAAGTTCGCTCTTCAGATTCCATTCCAAGTGGTTATATTACTGGAGAAATTAAGCCTTTGAGTGGTAATCACAAGAAAAGTAGTCCAAAGGCCAAAAGTTCATCAAGGGAGACCTCTCTTTTTGGAGGAGAAGGTGATGTCACTGAGAAACCCATTGACCCTATCAAGGTATACTCAGATAAGGAGTTAGTCAGGGAAATTGAGAAGATTGCATCTACCCTTGTGCCTGAAAAAGACTGGTCAATTCGTATTGCTGCTATGCAGAGAGTTGAAGGTCTTGTTCTAGGAGGTGCTACTGATCATCCATGTTTTCGTGGACTCCTAAAGCAACTTGTTGGACCTTTAAGCACACAATTGTCAGACCGGAGGTCTAGTATTGTGAAGCAGGCTTGCCATCTATTGTGCTTTTTGTCAAAGGAACTCTTGGGTGATTTTGAAGCATGTGCTGAAATGTTTATACCAGTCCTTTTCAAGCTGGTTGTGATTACTGTGCTTGTAATTGCAGAGTCTGCAGATAACTGCATAAAAACGATGCTGCGCAACTGCAAAGTTGCTCGTGTTCTTCCCCGCATAGCTGATTGTGCGAAAAGTGATCGCAATGCAGTACTTCGTGCAAGGTGTTGTGAATATGCTCTTTTGGTCCTAGAACATTGGCCGGATGCACCGGAAATACATCGATCAGCTGATTTATACGAGGATATGATAAAGTGCTGTGTTTCAGATGCAATGAGTGAGGTACGATCTACAGCAAGGATGTGCTACAGAATGTTTGCAAAAACTTGGCCAGAGCGTTCTCGTCGCCTATTTTCATCATTTGACCCTGTTATTCAACGGTTAATAAATGAAGAGGATGGAGGAATACATAGGCGACATGCTTCACCTTCCATTCGTGATAGAGGTGCACTGATGTCATTACCCAGTCAAGCCTCTGCTCCCTCTAATCTACCTGGTTATGGAACTTCTGCTATTGTTGCAATGGATAGAAGTTCAAGTTTATCATCAGGGACATCTATCTCCTCTGGTGTACTTCTTTCACAAGCTAAGTCACTTGGTAAGGGCACAGAACGTAGTTTGGAAAGTGTGTTGCACGCAAGCAAGCAGAAGGTCACTGCTATTGAAAGCATGCTTAGAGGCTTGGATTTGTCTGATAAGCACCGGTCGTCAAGTTTGGATCTAGGTACCCCTAGTGCAGAAGTTGACCCTCCATCATCTCGTGATCCACCTTTCCCTGCTGCTGTCTCTGCATCTAATCATCTGACAAGCTCTTTAACAGCAGAATCAGTTGCTTCTGGTGTCAATAAAGGTAGTAACCGGAATGGTGGTCTGGGTTTGTCTGACATAATCACTCAAATTCAAGCTTCCAAAGATTCTGCCAAGTTATCATATCATAGTAATGCTGGTATTGAGCCTTTATCATCATATTCAACTAAAAGGCCTTCTGAAAGACTACAAGATAGAAGTTCTATTGATGACAACAGTGACATTAGGGAAGCTAGGCGATTTATGAACCACAACACTGATAAGCACTATTTGGATGCCCCTTATAGAGATGGAAACTTTAGGGAATCACATAATAGTTATGTGCCTAATTTTCAGAGGCCACTTTTGAGAAAGAATGTAGCTGGACGTATGTCTTCTGGCAGGAGGAGGAGTTTTGATGATAACCAGCTATCTCTTGGAGAGATATCAAATTATACAGATGGACCGGCATCTCTTCATGAAGCTTTGAGTGAAGGACTCAGTTCAGGTTCTGACTGGTCTGCTAGGGTTGCTGCCTTTAACTATCTTCACTCTTTGTTGCAGCAAGGTCCAAAGGGAATTGTAGAAGTTGTGCAGAATTTTGAGAAGGTGATGAAGTTGTTTTTCCAGCACTTAGATGATCCCCACCATAAAGTTGCACAAGCTGCTCTTTCAACACTAGCAGATATTATTCCAGCATGCAGAAAGCCTTTTGAAGGTTACATGGAAAGAATATTGCCCCATGTCTTCTCTCGGTTAATTGATCCGAAAGAGCTTGTTAGGCAGCCATCTTCAACAACTTTGGAAGTTGTTAGCAAAACTTACAGTATCGATTCTCTCTTACCTGCATTGTTACGCTCACTGGATGAACAAAGGTCTCCAAAGGCTAAATTGGCTGTTATTGAATTTGCAATCAGTTCCTTTAACAAACATGCAATGAATGCTGAAGGTGCTGCTAATATAGGCATCCTAAAATTATGGCTTGCTAAGTTAACCCCTTTGGCTCATGACAAAAATACAAAGCTGAAAGAAGCAGCTATTACATGCATTATATCAGTGTACTCGCACTTTGATTCAATTGCAGTTCTTAATTTCATTCTTAGTTTATCAGTTGAAGAACAAAATTCTCTGAGACGAGCCCTTAAACAGTACACCCCTCGCATTGAAGTAGACCTAGTGAACTATCTACAGAACAAGAAAGAGCGACAACGCTCTAAGTCTTCCTATGATCCATCTGATGTTGTGGGAACATCCTCTGAAGATGGATATGTTGGTTTCTCTAGGAAAGCTCATTACCTTGGAAGGTATTCCGCTGGTTCCCTTGATAGTGATGGTGGCAGGAAGTGGAGTTCCCAAGATTCAACTCTGATGAAAGCCACTCTTGCTCAAGCAGCTTCTGTTGAAACTCCAGAACATCCTAATCATAATCTTGAAACTGATTCTAATAATGGTAGTTTGGGTTTAAAATCCAAAGATCTTGCTTATTCAGTCAATTCAATTGGTCAAAACTTTGGCTCTCAAACTAGCCAGTTTGGACATGTGGACAGTAGCATGAACTTTGAGGGTCTTTCAACTCCTCGTCTCGATGTTAATGGTCTGATGTCATTAGAACATTTAAATATTGCAGAAGGCTATGTACATGACAAAGAACGATCTTCTGAATCAGAACTTAATCTTCACTCAGCTGAAGCTGTAAAGATGAACTCCGTGACAGACACAGGACCCAGCATTCCTCAAATTCTTCATATGATATGTAGTGGGGGTGATGGAAGCCCTGTTTCAAGTAAACGGATGGCACTTCAACAGTTAGTTGAAGCTTCTATAACAAATGACCATTCTGTTTGGAATAAGTACTTCAACCAGATTTTGACAGTTGTGCTTGAGGTGCTAGATGATTCGGATTCTTCTGTCAGAGAGCTTGCTCTTTCTTTGATTGTTGAAATGCTTAAAAACCAGAAAGATGCCATGGAGAATTCAGTTGAGATTGTAATTGAGAAGCTGCTTCATGTTACAAAAGATCTCATTCCTAAGGTCTCAAATGAAGCAGAGCACTGCCTGACCATTGTTTTATCTCAGTATGATCCATTCAGATGTTTAAGTGTTATTGTCCCTCTACTGGTTACTGAGGATGAGAAAACACTTGTCACTTGCATAAATTGCTTAACAAAGCTTGTGGGGAGGCTCTCTCAGGAGGAATTGATGGCTCAGTTACCCTCATTTCTGCCTTCTCTTTTCGAAGCTTTTGGAAACCAGAGTGCAGATGTTCGTAAGACTGTTGTCTTCTGTCTCGTGGATATTTATATCATGCTTGGGAAAGCATTCTTGCCATATTTGCAAGGCCTTAACAGCACACAGTTGAAGCTGGTCACCATTTATGCAAATCGAATCTCACAAGCCAGGACTGGCAAAGCAATTGATGCCGTTCATGATTAG 4332 0.4298 MEEALELARAKDTKERMAGVERLYQLLEASRKSLSSSEVTLLVDSCYDLLKDNNFRISQGALQALASAAVLSGEHFKLHFNALLPAVVDRLGDAKQPVRDAARRLLLTLMEVSSPTIIVERAGSWAWAHKSWRVREEFTRTVTSAINLFASTELPLQRAILPPVLHLLNDPNPAVREAAILCIEEMYTQAGPQFRDELHRHNLPSSLVKDINARLEGIQPKVRSSDSIPSGYITGEIKPLSGNHKKSSPKAKSSSRETSLFGGEGDVTEKPIDPIKVYSDKELVREIEKIASTLVPEKDWSIRIAAMQRVEGLVLGGATDHPCFRGLLKQLVGPLSTQLSDRRSSIVKQACHLLCFLSKELLGDFEACAEMFIPVLFKLVVITVLVIAESADNCIKTMLRNCKVARVLPRIADCAKSDRNAVLRARCCEYALLVLEHWPDAPEIHRSADLYEDMIKCCVSDAMSEVRSTARMCYRMFAKTWPERSRRLFSSFDPVIQRLINEEDGGIHRRHASPSIRDRGALMSLPSQASAPSNLPGYGTSAIVAMDRSSSLSSGTSISSGVLLSQAKSLGKGTERSLESVLHASKQKVTAIESMLRGLDLSDKHRSSSLDLGTPSAEVDPPSSRDPPFPAAVSASNHLTSSLTAESVASGVNKGSNRNGGLGLSDIITQIQASKDSAKLSYHSNAGIEPLSSYSTKRPSERLQDRSSIDDNSDIREARRFMNHNTDKHYLDAPYRDGNFRESHNSYVPNFQRPLLRKNVAGRMSSGRRRSFDDNQLSLGEISNYTDGPASLHEALSEGLSSGSDWSARVAAFNYLHSLLQQGPKGIVEVVQNFEKVMKLFFQHLDDPHHKVAQAALSTLADIIPACRKPFEGYMERILPHVFSRLIDPKELVRQPSSTTLEVVSKTYSIDSLLPALLRSLDEQRSPKAKLAVIEFAISSFNKHAMNAEGAANIGILKLWLAKLTPLAHDKNTKLKEAAITCIISVYSHFDSIAVLNFILSLSVEEQNSLRRALKQYTPRIEVDLVNYLQNKKERQRSKSSYDPSDVVGTSSEDGYVGFSRKAHYLGRYSAGSLDSDGGRKWSSQDSTLMKATLAQAASVETPEHPNHNLETDSNNGSLGLKSKDLAYSVNSIGQNFGSQTSQFGHVDSSMNFEGLSTPRLDVNGLMSLEHLNIAEGYVHDKERSSESELNLHSAEAVKMNSVTDTGPSIPQILHMICSGGDGSPVSSKRMALQQLVEASITNDHSVWNKYFNQILTVVLEVLDDSDSSVRELALSLIVEMLKNQKDAMENSVEIVIEKLLHVTKDLIPKVSNEAEHCLTIVLSQYDPFRCLSVIVPLLVTEDEKTLVTCINCLTKLVGRLSQEELMAQLPSFLPSLFEAFGNQSADVRKTVVFCLVDIYIMLGKAFLPYLQGLNSTQLKLVTIYANRISQARTGKAIDAVHD. 1444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g04481 1443 Pfam HEAT repeat 160 187 IPR000357 GO:0005515
Seca2g04481 1443 ProSiteProfiles HEAT repeat profile. 83 121 IPR021133 -
Seca2g04481 1443 Pfam CLASP N terminal 285 500 IPR024395 -
Seca2g04481 1443 Pfam CLASP N terminal 800 990 IPR024395 -
Seca2g04481 1443 MobiDBLite consensus disorder prediction 688 708 - -
Seca2g04481 1443 MobiDBLite consensus disorder prediction 1095 1118 - -
Seca2g04481 1443 FunFam Protein peg1 266 513 - -
Seca2g04481 1443 MobiDBLite consensus disorder prediction 222 266 - -
Seca2g04481 1443 ProSiteProfiles HEAT repeat profile. 160 198 IPR021133 -
Seca2g04481 1443 SUPERFAMILY ARM repeat 6 402 IPR016024 -
Seca2g04481 1443 Gene3D - 1226 1435 IPR011989 -
Seca2g04481 1443 Gene3D - 1 221 IPR011989 -
Seca2g04481 1443 Gene3D - 794 1018 IPR011989 -
Seca2g04481 1443 Coils Coil 1279 1299 - -
Seca2g04481 1443 Coils Coil 10 30 - -
Seca2g04481 1443 Gene3D - 267 506 IPR011989 -
Seca2g04481 1443 SMART TOG_3 3 224 IPR034085 -
Seca2g04481 1443 SMART TOG_3 1196 1435 IPR034085 -
Seca2g04481 1443 SMART TOG_3 784 1027 IPR034085 -
Seca2g04481 1443 SMART TOG_3 282 514 IPR034085 -
Seca2g04481 1443 PANTHER CLASP 32 1429 - -
Seca2g04481 1443 MobiDBLite consensus disorder prediction 604 637 - -
Seca2g04481 1443 SUPERFAMILY ARM repeat 290 1433 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g04481 Seca-Chr2 130419512 130434782 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g04481 K16578 - gmx:100796697 2536.14
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca2g04481 2 130419512 130434782 Seca2g04481 2 130419512 130434782 ECH
Seca8g05522 8 146592034 146613414 Seca2g04481 2 130419512 130434782 PCT