Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g05484 ATGCCGTTTCATTATTTTTCTGATCATTTGTTGTTGTCTTATTTGGTTCAGCCGAAGAGAGAAGCAATGAGAACAGAGTTGAAGAAGAAGATATCCAAGTCTTCGTGGCCGAAATTGGATGTGAAGAAGTGGCTCAATATGAAGAGTGGTGAGGACAAGTTTCACTCAGATTACTCTATAGCAGAGGGGTGGTTGATGGATGCTGCCAATGGAATGAAACATTCGGTGCCGGGGAAGGAAGGACCACTTGTCACTGACACTGACACGCTCACCCTTAGGATGTTCGTGGGGACGTGGAATGTTGGAGGGAAGTCACCAAACGAGGAATTGAACTTGAAGGATTGGCTCATGTTGCCTTCGCCAGCTGATATCTATGTCATTGGGTTCCAAGAAATTATACCCCTAAACGCAGGTAACGTGCTTGGGCCTGAGGATAGTGGCCCAGCAGCGAAATGGATGGGCCTTATTCGTGAAGCCTTGAACTCAAGTAGCCCAAATAAGAAGCAACGTTATTGCCTAGCAGCAAGCAAGCAAATGGTGGGTATCTTCTTGTGCGTGTGGGTACAAGCAGATCTTTACAACCACCTTACCAATTTAAAGGTGTCCTGTGTTGGTAGAGGCATCATGGGCTATCTAGGAAATAAGGGTTCAATATCAATTAGCATGACATTGTACCACACCACGTTCTGTTTCGTTTGTACACACTTGGCTTCGGGAGAGAAAGATGGTGATGAGGTGCGAAGAAATTTGGACGTCTCAGAAATCTTGAAGAAAACTAAATTCTCTCACTCATTTAAAGATCTTGCTCATCCACTCCCTCCTGAAACCATACTAGAACATGACAAGATTATTTGGCTTGGGGATTTGAATTATCGGCTTGCTAGTGGTTACGATGATACACATGAGCTACTTAAGAAAAATGATTGGCAGGCACTATTAGAGAAGGATCAGCTAAGGATAGAGCAGAGAGCTGGTCGAGTATTCAAAGAGTGGAAAGAAGGGAAGATATATTTTGCTCCAACTTACAAATACTTATTCAATTCTGACCAATATGTTGCCCAAACGTCCAGGTCCAAGGAAAAACGACGCACTCCAGCTTGGTGTGATCGAATACTGTGGAAAGGGGAAGGAGTTGAGCAGTTATGGTACGTGAGAGGAGAGTCCAAATTCTCAGACCATAGGCCAGTGTCTTCACTCTTCTCAGTTCATGTGAACTTGAGAACATGTAAGAAGATGAATCACTCTGTAAATGTTGCGGCTTCAGATGTGTCAATGTCAAGGTCATGCCCTTCTAGACACTTGACAAATGCTGCATTGTCTTCATCTTGTGCAGCTAAAGTCCAGGCAGAGGAACAGCTATTGTTGCTAACAAGGCCAAAAAGTTGCATAAACATGGCACCTCCTGCAGGGTATATTAATTAA 1422 0.4381 MPFHYFSDHLLLSYLVQPKREAMRTELKKKISKSSWPKLDVKKWLNMKSGEDKFHSDYSIAEGWLMDAANGMKHSVPGKEGPLVTDTDTLTLRMFVGTWNVGGKSPNEELNLKDWLMLPSPADIYVIGFQEIIPLNAGNVLGPEDSGPAAKWMGLIREALNSSSPNKKQRYCLAASKQMVGIFLCVWVQADLYNHLTNLKVSCVGRGIMGYLGNKGSISISMTLYHTTFCFVCTHLASGEKDGDEVRRNLDVSEILKKTKFSHSFKDLAHPLPPETILEHDKIIWLGDLNYRLASGYDDTHELLKKNDWQALLEKDQLRIEQRAGRVFKEWKEGKIYFAPTYKYLFNSDQYVAQTSRSKEKRRTPAWCDRILWKGEGVEQLWYVRGESKFSDHRPVSSLFSVHVNLRTCKKMNHSVNVAASDVSMSRSCPSRHLTNAALSSSCAAKVQAEEQLLLLTRPKSCINMAPPAGYIN. 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g05484 473 Gene3D Endonuclease/exonuclease/phosphatase 84 428 IPR036691 -
Seca8g05484 473 SMART i5p_5 90 408 IPR000300 GO:0016791|GO:0046856
Seca8g05484 473 Pfam Endonuclease/Exonuclease/phosphatase family 97 393 IPR005135 GO:0003824
Seca8g05484 473 SUPERFAMILY DNase I-like 90 405 IPR036691 -
Seca8g05484 473 FunFam Type I inositol polyphosphate 5-phosphatase 8 74 426 - -
Seca8g05484 473 PANTHER TYPE IV INOSITOL POLYPHOSPHATE 5-PHOSPHATASE 9 41 418 IPR045849 GO:0004445
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g05484 Seca-Chr8 146097183 146102483 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g05484 92 404 Acyl Lipid Metabolism Gene Families AT1G65580 31.579 1.52e-40 153
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g05484 - - vra:106771110 742.265
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g05484 8 146097183 146102483 Seca2g04525 2 131004592 131010826 PCT