Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g05410 ATGGGATCACTAGAAAGATCAAAAAAGAAAGTTCTGCTATGGAAGAAAGCCATGGTGCATTTTTCTCTATGTTTTGTGATGGGGTTCTTTACAGGCTTTGCTCCAACAAGTAAATCTATATATCCCCACCATGTTGCTGCCTCAAATAGATCAGAATTTGCACCACAACCTATTGAAGTGTCACAGAGGACAACAAATGTCAATAGAAGTTGGATTGCTCCAACACCAGAGCCAACAAGCACAAGGTCTATAGAGCATAAACAAACAACAAAACTGCATGTAAAACCAGGGCCCCAGTTGAAGCCTAGAAGACTCATAATCATTGTAACTCCAACAAGCACAAAACTTCCCTTCCAAGCAGTGTTTTTGAGAAGGTTGGCAAATACTATAAAGCTGGTTCCTCAACCATTGCTGTGGATTGTTGTGGAAGGGCAAACAGATTCTACAGAACTTTCAGAGATACTTAGGAATACTGGCATCATGTATAGGCATTTGGTTTCCAAGGAAAACTTTACCAACATAGAAGCTGAACTGAATCACCAGAGGAATCTTGCACTCAAGCACATTGAGCATCACAGGCTGAGTGGGATTGTACACTTTGCTGGGCTTTCCAATGTTTATGATCTCGAATTCTTTCAACAACTAAGGCATATTGGGGTATTTGGAGCATGGCCAGTGGCATTTTTAGCAGCAAACAGGAAGAAAGTGATAATTGAAGGACCTGTATGCGACGATTCTTCACAAGTCATAGGATGGCATCTAAGGAATGTGAACATTGAAAATGATGCAATCACTCCTCCCATTCATGTTTCAAGTTTTGCATTCAATAGCTCCATCCTCTGGGATCCTGAGAGATGGGGTCGCACTTCCTCTGTTCAAGACACCTTTCAGAATTCAATCAAATTAGTGAAACAAGTAGTTCTAGAGGATGAGGCAAAGTTGAAGGGAATTCCATCAAAGGACTGCTCAAGAATCTTGCTTTGGCGTTTCAATTTTCATGGCCGCACCACTTCAAATCTTAAACCCCTGACTACTACATCAGATAGTATCTGA 1053 0.4112 MGSLERSKKKVLLWKKAMVHFSLCFVMGFFTGFAPTSKSIYPHHVAASNRSEFAPQPIEVSQRTTNVNRSWIAPTPEPTSTRSIEHKQTTKLHVKPGPQLKPRRLIIIVTPTSTKLPFQAVFLRRLANTIKLVPQPLLWIVVEGQTDSTELSEILRNTGIMYRHLVSKENFTNIEAELNHQRNLALKHIEHHRLSGIVHFAGLSNVYDLEFFQQLRHIGVFGAWPVAFLAANRKKVIIEGPVCDDSSQVIGWHLRNVNIENDAITPPIHVSSFAFNSSILWDPERWGRTSSVQDTFQNSIKLVKQVVLEDEAKLKGIPSKDCSRILLWRFNFHGRTTSNLKPLTTTSDSI. 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g05410 350 CDD GlcAT-I 104 332 IPR005027 GO:0015018|GO:0016020
Seca8g05410 350 PANTHER GALACTOSYLGALACTOSYLXYLOSYLPROTEIN 3-BETA-GLUCURONOSYLTRANSFERASE BETA-1,3-GLUCURONYLTRANSFERASE 13 337 IPR005027 GO:0015018|GO:0016020
Seca8g05410 350 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 104 347 IPR029044 -
Seca8g05410 350 Pfam Glycosyltransferase family 43 126 331 IPR005027 GO:0015018|GO:0016020
Seca8g05410 350 SUPERFAMILY Nucleotide-diphospho-sugar transferases 104 342 IPR029044 -
Seca8g05410 350 FunFam Glycosyltransferases 104 345 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g05410 Seca-Chr8 145073641 145075862 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g05410 1 336 Glycosyltransferase AT2G37090 58.453 8.34e-143 406
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g05410 K20869 - gmx:100803434 579.326
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g05410 8 145073641 145075862 Seca8g05410 8 145073641 145075862 ECH
Seca8g05410 8 145073641 145075862 Seca2g04596 2 132038916 132041404 PCT