Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g05353 ATGGAATCTGCAAGGAGTATGTTTTGTTCGTCTCCACCGTTCCCTCCAAGAACTCACCATTGGAACACTCTTCCTTCATCTCCTTATACTTCTGTTTTGATGCTTCGGGAACAAGCTGCTCCTACAGTCGCCTCTTGGTCTACTAGTTTTTCAGCACAGAATTTTCCCACCTCAGTTCTTTTACAAGAGCAGCGTGATGAATATAGGCCTCTATTGCACATTTCTAAGGAAGACAAGACATGCCAGGCAATATTAAATACAAGGCAGATGGATATGATCTCCGTCCATGAAGAGAATAATACTGGCAATGCTGATAAGGTAGTGCATGACTTTAGGCAGCACCTGCATCTCTGGCCTCGTTTACGGAACTTATTATCTTCCTCACAAACAGGAGAAATCGATACTTCTTCAACTTTACAGCATGTTATTGTTGACTCAGAGAGGCCTGGAGATGGTTTGCAATGTAATACAGTTTCTCATGCTAAGAAAGCTCTGTCTCCCTCAAAACAAGCAGCCTCAGTAGCTGAAGACTTGAAATCAATCAAAGCTGATGAGGATGCTGATGATTCAATTCCTTTTGGTCTGGCCTCTGCCAGATCGACTGGCCCTTCACTTGGAAGCAATAAAACTGTGAGGTCAACACGGCTTCTAGAAAGACGATTAAAACAAAGAAAAGTACCAAAGTCAAAAGTTAAAGACAATGAAAATTACCTTGCAAGAAAGAATGATGCAAAGGGAAGGCTACATGTTGAAAAGAAAATAAATGAAGAAATTGATCAAAATGATCCCCTGCGCTTGTGGAGTCCTGCAACAAAACAACTTTTGACTCTTGAACAAGAGTCTCAATTGATTTCTCAGATTCAGGACTTACTGAGATTAGAAGAATTGAAGACCAATCTTCAATCTCAATTTGGAAGGGAACCAACTATGGCAGAATGGGCTGAGGGTGCTGGACTTAACAGTCGTGTGCTAAAGGCACAGCTTCGATGTGGTAACAGAAGCAGAGAAAAGCTGATTCAAGCAAATTTACGCATGGTACTCCACGTTGCTAAAACATATCAGGGGCGTGGTCTCAGCCTTCAGGACTTATTACAGGAGGGAAGTATGGGTCTTTTGAAGTCTGTTAAAAAGTTTAAGCCCCAAGCCGGTTACCGATTTGGTAATTATGCATACTGGTGGATAAAGCAAGCAATAAGGAAGGCTATATTCCATCATTCACGGACAATCCGTCTACCGGAAAGGGTGTATACCCAATTGGGAAAAGTATTGGAGGCAAAGAAATTGTACATTCAAGAGGGAAATCTTCACCCAACCAAAGAAGAATTAGCAAGTAGGTCAGGAATTGCAGTAGAGAAGATTGACAATTTGCTATTTGTTGCAAGAATTCCAGTTTCTATGCAGCAAACTGTCTGGACAGACCAAAATACAACTTTCCAGGAGATCACTGCAGACACAGCAATTGAGACCCCAGAAATGAGTGTTGCAAAACAGCTTATGAGGCGGCATGTGCTCAACCTCCTAAGTGTTTTACGCCCCAAAGAAAGGAAGATAATTAGGCTAAGATTTGGTTTTGAGGACGGGGAACAGAAATCTCTATCAGAGGTTGGAGACATGTTTGGTTTGTCTAAGGAAAGGGTTCGTCAGTTGGAGAGCCGTGCATTCTACAAGCTAAAGAAGTGCCTTGTCAATCAAGGACTTGATGCCTATGCAGATTTGCTTGTATAG 1725 0.4203 MESARSMFCSSPPFPPRTHHWNTLPSSPYTSVLMLREQAAPTVASWSTSFSAQNFPTSVLLQEQRDEYRPLLHISKEDKTCQAILNTRQMDMISVHEENNTGNADKVVHDFRQHLHLWPRLRNLLSSSQTGEIDTSSTLQHVIVDSERPGDGLQCNTVSHAKKALSPSKQAASVAEDLKSIKADEDADDSIPFGLASARSTGPSLGSNKTVRSTRLLERRLKQRKVPKSKVKDNENYLARKNDAKGRLHVEKKINEEIDQNDPLRLWSPATKQLLTLEQESQLISQIQDLLRLEELKTNLQSQFGREPTMAEWAEGAGLNSRVLKAQLRCGNRSREKLIQANLRMVLHVAKTYQGRGLSLQDLLQEGSMGLLKSVKKFKPQAGYRFGNYAYWWIKQAIRKAIFHHSRTIRLPERVYTQLGKVLEAKKLYIQEGNLHPTKEELASRSGIAVEKIDNLLFVARIPVSMQQTVWTDQNTTFQEITADTAIETPEMSVAKQLMRRHVLNLLSVLRPKERKIIRLRFGFEDGEQKSLSEVGDMFGLSKERVRQLESRAFYKLKKCLVNQGLDAYADLLV. 575
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g05353 574 Pfam Sigma-70 region 2 338 407 IPR007627 GO:0003700|GO:0006352|GO:0006355
Seca8g05353 574 Gene3D - 493 573 IPR036388 -
Seca8g05353 574 Pfam Sigma-70, region 4 506 559 IPR007630 GO:0003700|GO:0006352|GO:0006355
Seca8g05353 574 SUPERFAMILY Sigma3 and sigma4 domains of RNA polymerase sigma factors 411 484 IPR013324 -
Seca8g05353 574 ProSitePatterns Sigma-70 factors family signature 2. 531 557 IPR000943 GO:0003700|GO:0006352|GO:0006355
Seca8g05353 574 CDD Sigma70_r4 500 558 - -
Seca8g05353 574 PRINTS Major sigma-70 factor signature 531 546 IPR000943 GO:0003700|GO:0006352|GO:0006355
Seca8g05353 574 PRINTS Major sigma-70 factor signature 362 375 IPR000943 GO:0003700|GO:0006352|GO:0006355
Seca8g05353 574 PRINTS Major sigma-70 factor signature 386 394 IPR000943 GO:0003700|GO:0006352|GO:0006355
Seca8g05353 574 PRINTS Major sigma-70 factor signature 546 557 IPR000943 GO:0003700|GO:0006352|GO:0006355
Seca8g05353 574 PRINTS Major sigma-70 factor signature 510 522 IPR000943 GO:0003700|GO:0006352|GO:0006355
Seca8g05353 574 ProSitePatterns Sigma-70 factors family signature 1. 362 375 IPR000943 GO:0003700|GO:0006352|GO:0006355
Seca8g05353 574 Gene3D - 411 488 IPR036388 -
Seca8g05353 574 SUPERFAMILY Sigma2 domain of RNA polymerase sigma factors 271 408 IPR013325 GO:0003700|GO:0006352|GO:0006355
Seca8g05353 574 Gene3D - 207 407 - -
Seca8g05353 574 Pfam Sigma-70 region 3 418 493 IPR007624 GO:0003700|GO:0006352|GO:0006355
Seca8g05353 574 NCBIfam sigma-70 family RNA polymerase sigma factor 334 561 IPR014284 GO:0003700|GO:0006352|GO:0006355
Seca8g05353 574 PANTHER RNA POLYMERASE SIGMA FACTOR RPO 157 570 - -
Seca8g05353 574 SUPERFAMILY Sigma3 and sigma4 domains of RNA polymerase sigma factors 471 569 IPR013324 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g05353 Seca-Chr8 144332930 144338194 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g05353 - - gmx:100306289 883.248
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g05353 8 144332930 144338194 Seca8g05353 8 144332930 144338194 ECH
Seca8g05353 8 144332930 144338194 Seca2g04654 2 132658497 132663535 PCT