Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g04654 ATGTTTTCTTCCTCTCCACCGTTTCCTTCGCATTCAGGTATGAAGCTTCATGAACTAGCTTCTCCTGCAGTCTCCTCTTGGTCTTCTAGTTTTGCAGCTCAGCATTTTCCTACCTCAGTTCTTTTGCAAGAGCAGCGTGATGAGTATAGGCCTTTACCTCATATTTATAAGGAAGACAAGATACCCCAGGCGACATTAAATACAAGGCAGATGGATGTAGCCTCAGTTCCTGAGAAAAGCAATATTGGCAATGGTGATGAGTTAGTGCATAATTTTATGCAGCAGTTGCATCTCCGGTCTCATTTACAGAACTTATTGAGTTCTTCATCAACAGGGGAAATTGCTGCTGCTTCTGCTTTGCAACCTATTGTTGTTGATTCAGAGAGGCCTCCAGATGGCCTACAATGGAATGCAGTTTCTCTTGCTAAGCAAGCATTGTCAGCCTCAAAACAAGCGGCTTCAGTAGCTGAAGAGTTGAAATTGATTAATGCTGATGATGATGATCCACGTCCTTTTGGTCTGGCCTCCACAAGTTTGGCTGACTCTTCACTTGGAAAGAATAAAATTGTGAGGTCAACACGGGTTAAAGAAAGGCGATCTAAACAGAGAAAAGCAACAAAATCCAAAGTTCTTGATGAAGAAAGTTACCTTACAAGAAGGTCCAATGTACAGGGAAGGTTACGTTTAGAAAGGAAGTTAAAAGAAGGGTTTGATCAAAATGATCCCCTAAGCTCGTTCTTACGGGGTCCTGAAACAAAGCAACTTTTGACCGTTGAAGAAGAGTCTAAATTGATCCCTCAGATACAGGTGGTGTCTTTCAGAATCCCATATTTCTTTAAATGCATGGACTTATTTAGATTGGAAGAAGTGAAGATCAAGCTTCAATCTCAGTTTGACCGGGAACCAACTTTGGCTGAATGGGCAGATGGTGCAGGTCTTAGCCGTCATGCCCTGCAGACACAGATTCTTCGTGGTAACAGAAGCAAAGAAAAGCTGATTAATGCCAATTTGCGTATGGTAGTTCACATTGCTAAACATTATCAGGGGCGTAGTCTCAGCTTTCAGGACTTACTACAGGAGGGAACTGTGGGTCTCATGAAGAGTGTTGAAAGGTTTAAACCCCAAGCTGGTTGCCGGTTTGGTACTTATGCTTACTGGTGGATAAGGCAAACAATACGGAGGGCCATATTTCTACATTCCAGGACAATCCGTCTGCCGGAGAATTTTTACGCCCTTTTGGGAAAGTTCACGGAAGCAAAGAAATTGTACATAAAAGAAGGAAATCTTCGCCCCACGAAAGAAGAATTAGCAAGCAGGGTAGGAATTACAGTAGACAAGTTGGAATTGTTGCTATTTGCTGCAAGAATTCCACTTTCAATGCAGCAAACTGTGTGGGCAGACCAGGATACAACTTTCCAGCTGAAGGTCATTCAGCTCCCCGTTTTAAACTGGCAAGTGTCCGTATGGAGTCTTTTGCTTGTGTTGATAATGATAAAAACAAATTGGTGGAAATCTAATTGCAGAGAAAGCCAAAATCTGGTATCTAGTGTTGGGGTTGCAGTTCTAGATCTAAGTTATTATCATACTGTTCTGGAGATTACTGCTGACTCTGCAGTTGAGATCCCAGATGTCTATGTTGCAAAACAGCTAATGAGGAGCCATGTGCGCAACCTCCTAAATATCTTAAGCCCAAGAGAAAGGAGGATAATCAGGCTAAGATTTGGTATTGAGGATGGCTACGAGAAATCGTTGTCAGAAATTGGCAACATATACGGTTTGACTAAGGAGAGGGTTCGACAGTTGGAGAGCCGAGGAATGAACAAGCTCAAGCAGTGCCTTGATGCTCAAGGACTTGATGCATATTCGGACTTGATTATATAG 1881 0.4253 MFSSSPPFPSHSGMKLHELASPAVSSWSSSFAAQHFPTSVLLQEQRDEYRPLPHIYKEDKIPQATLNTRQMDVASVPEKSNIGNGDELVHNFMQQLHLRSHLQNLLSSSSTGEIAAASALQPIVVDSERPPDGLQWNAVSLAKQALSASKQAASVAEELKLINADDDDPRPFGLASTSLADSSLGKNKIVRSTRVKERRSKQRKATKSKVLDEESYLTRRSNVQGRLRLERKLKEGFDQNDPLSSFLRGPETKQLLTVEEESKLIPQIQVVSFRIPYFFKCMDLFRLEEVKIKLQSQFDREPTLAEWADGAGLSRHALQTQILRGNRSKEKLINANLRMVVHIAKHYQGRSLSFQDLLQEGTVGLMKSVERFKPQAGCRFGTYAYWWIRQTIRRAIFLHSRTIRLPENFYALLGKFTEAKKLYIKEGNLRPTKEELASRVGITVDKLELLLFAARIPLSMQQTVWADQDTTFQLKVIQLPVLNWQVSVWSLLLVLIMIKTNWWKSNCRESQNLVSSVGVAVLDLSYYHTVLEITADSAVEIPDVYVAKQLMRSHVRNLLNILSPRERRIIRLRFGIEDGYEKSLSEIGNIYGLTKERVRQLESRGMNKLKQCLDAQGLDAYSDLII. 627
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g04654 626 Gene3D - 541 614 IPR036388 -
Seca2g04654 626 PANTHER RNA POLYMERASE SIGMA FACTOR RPO 135 621 - -
Seca2g04654 626 CDD Sigma70_r4 552 610 - -
Seca2g04654 626 Gene3D - 237 401 - -
Seca2g04654 626 SUPERFAMILY Sigma2 domain of RNA polymerase sigma factors 239 402 IPR013325 GO:0003700|GO:0006352|GO:0006355
Seca2g04654 626 SUPERFAMILY Sigma3 and sigma4 domains of RNA polymerase sigma factors 405 472 IPR013324 -
Seca2g04654 626 ProSitePatterns Sigma-70 factors family signature 2. 583 609 IPR000943 GO:0003700|GO:0006352|GO:0006355
Seca2g04654 626 NCBIfam sigma-70 family RNA polymerase sigma factor 330 613 IPR014284 GO:0003700|GO:0006352|GO:0006355
Seca2g04654 626 SUPERFAMILY Sigma3 and sigma4 domains of RNA polymerase sigma factors 529 621 IPR013324 -
Seca2g04654 626 Pfam Sigma-70, region 4 558 611 IPR007630 GO:0003700|GO:0006352|GO:0006355
Seca2g04654 626 PRINTS Major sigma-70 factor signature 356 369 IPR000943 GO:0003700|GO:0006352|GO:0006355
Seca2g04654 626 PRINTS Major sigma-70 factor signature 380 388 IPR000943 GO:0003700|GO:0006352|GO:0006355
Seca2g04654 626 Pfam Sigma-70 region 3 413 473 IPR007624 GO:0003700|GO:0006352|GO:0006355
Seca2g04654 626 ProSitePatterns Sigma-70 factors family signature 1. 356 369 IPR000943 GO:0003700|GO:0006352|GO:0006355
Seca2g04654 626 Gene3D - 405 477 IPR036388 -
Seca2g04654 626 Pfam Sigma-70 region 2 332 396 IPR007627 GO:0003700|GO:0006352|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g04654 Seca-Chr2 132658497 132663535 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g04654 - - gmx:100815699 627.091
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca2g04654 2 132658497 132663535 Seca2g04654 2 132658497 132663535 ECH
Seca8g05353 8 144332930 144338194 Seca2g04654 2 132658497 132663535 PCT