Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g05106 ATGACTTCTCCCCACATTTTCTGTCTACTCTGTCTCCTCTCTGTCATCACCTTCACTTCAGCTTCTTCATCATCAACCAACACCATTAATATTCCCATTACTCCCTTGTTCACCAAACACCCCTCCTCAGACCCATTTCAGACCCTCAAATTCGTTTCTTCTGCTTCAATCACCAGAGCCCACCACCTCAAGCACCACAAATCTCACTACAATAACAATTCACCTCTTGTCAAGACACCCCTTCATCCCAAAAGTTACGGAGGATACTCCATCGATCTCAAATTCGGAACCCCACCACAAACCTTCTCTTTCGTTTTGGACACCGGAAGCAGCCTCGTATGGCTCCCTTGCTCCTCTCATTACCTCTGTTCCAAATGTAACACAGACCCAACCAAACTCCCCAAGTTCATCCCCAAAAACTCTACCTCTTCAAAGTTCATAGGTTGTCACAACCCAAAATGCTCTTGGGTTTTCGGCCCCAACATTCAATCCCGCTGCCAAGACTGCAAACCCAACTCCACCAACTGCTCCCAAATCTGCCCTGCTTACACAATCCAATACGGTTTGGGCTCAACCGCGGGTTTCTTGCTATCGGAAAATCTCAACTTTCCGGGAAAAATCGTCCCTGATTTTCTCGTCGGGTGCTCGGTCATGTCCATATACCAACCGGCCGGAATCGCCGGCTTTGGCCGTGGGCCAGAGTCGGTTCCATCGCAGATGAATCTCAAGAGATTCTCTCACTGCTTGGTGTCTCACCGGTTCGACGACTCGCCGGAAAGCAGCGACCTCGTCTTGGATAACTCCTCCGGCGACAAGAAAACAAACGGCGTCAGCTACACGCCGTTTCAGAAAAACCCTCTGTCGAAGAATCCTGCATTGAGCAAGTACTATTACGTTACCCTCCGGAAAATCATCGTCGGCGGGAAGAAGGTGAGGATTCCGAGTAGGTTTCTGGCGCCGGATTCTAACGGTAACGGTGGGTCCATATTGGACTCTGGGTCCACGTTCACGTTCATGGAGAGGCCCGTTTTCGATTTGGTGGCCCAAGAGTTTGAGAAGCAGGTGAATTACACGAGGGTGAGAGACGCTGAGAAGCAATCTGGGTTGAGTCCTTGTTTCAATGTTTCAGGCCATGAAACGGCGTCGTTTCCGGGACTGACTTTTCAGTTCAGAGGCGGCGCTAAGATGACGCTGCCGCTAACGAATTATTTCTCGTTGGTGGGGAAATCCGACGTGGCGTGCTTGACGATTGTCTCTGATGACGTGGCCGGTCCCGGCGTGGCGGGTGGACCGGCTGTGATATTGGGGAATTATCAGCAGCAGAATTTCTACGTGGAGTATGACTTGGAAAACGAGAGGTTTGGGTTTAGGAGTCAGAGTTGCACAAAGAGCGTTTAG 1398 0.5043 MTSPHIFCLLCLLSVITFTSASSSSTNTINIPITPLFTKHPSSDPFQTLKFVSSASITRAHHLKHHKSHYNNNSPLVKTPLHPKSYGGYSIDLKFGTPPQTFSFVLDTGSSLVWLPCSSHYLCSKCNTDPTKLPKFIPKNSTSSKFIGCHNPKCSWVFGPNIQSRCQDCKPNSTNCSQICPAYTIQYGLGSTAGFLLSENLNFPGKIVPDFLVGCSVMSIYQPAGIAGFGRGPESVPSQMNLKRFSHCLVSHRFDDSPESSDLVLDNSSGDKKTNGVSYTPFQKNPLSKNPALSKYYYVTLRKIIVGGKKVRIPSRFLAPDSNGNGGSILDSGSTFTFMERPVFDLVAQEFEKQVNYTRVRDAEKQSGLSPCFNVSGHETASFPGLTFQFRGGAKMTLPLTNYFSLVGKSDVACLTIVSDDVAGPGVAGGPAVILGNYQQQNFYVEYDLENERFGFRSQSCTKSV. 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g05106 465 FunFam Aspartic proteinase nepenthesin-2 60 263 - -
Seca8g05106 465 SUPERFAMILY Acid proteases 82 461 IPR021109 -
Seca8g05106 465 Gene3D Acid Proteases 266 465 IPR021109 -
Seca8g05106 465 ProSiteProfiles Peptidase family A1 domain profile. 89 457 IPR033121 -
Seca8g05106 465 Pfam Xylanase inhibitor N-terminal 89 259 IPR032861 -
Seca8g05106 465 MobiDBLite consensus disorder prediction 261 277 - -
Seca8g05106 465 FunFam Aspartyl protease family protein 268 464 - -
Seca8g05106 465 MobiDBLite consensus disorder prediction 256 277 - -
Seca8g05106 465 PANTHER OS07G0603500 PROTEIN-RELATED 39 462 - -
Seca8g05106 465 CDD pepsin_A_like_plant 88 461 IPR034161 -
Seca8g05106 465 Gene3D Acid Proteases 69 260 IPR021109 -
Seca8g05106 465 PRINTS Pepsin (A1) aspartic protease family signature 328 339 IPR001461 GO:0004190|GO:0006508
Seca8g05106 465 PRINTS Pepsin (A1) aspartic protease family signature 433 448 IPR001461 GO:0004190|GO:0006508
Seca8g05106 465 PRINTS Pepsin (A1) aspartic protease family signature 95 115 IPR001461 GO:0004190|GO:0006508
Seca8g05106 465 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 104 115 IPR001969 GO:0004190|GO:0006508
Seca8g05106 465 Pfam Xylanase inhibitor C-terminal 297 457 IPR032799 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g05106 Seca-Chr8 140974482 140975879 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g05106 87 463 Miscellaneous Gene Families AT1G44130 24.938 1.91e-18 85.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g05106 - - pcin:129307094 655.981
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g05106 8 140974482 140975879 Seca8g05106 8 140974482 140975879 ECH
Seca8g05106 8 140974482 140975879 Seca2g04893 2 135384536 135385936 PCT