Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g04893 ATGGCTCCTCCTTACATTCTCTTCACTCTCTCTCTTCTCTCTCTCATCACATTCGCTTCTTCCAACCCCAACACCATCACTCTTCCCCTTTCCCCTTTATTCAAAAAATCCCCATCCTCAGATCTATTTCAGACTCTCAAAGTCGCAGCTTCTGCTTCTCTAAACAGGGCTCATCACCTCAAGCACCGCAAATCCAATCCCGCTCCTTCTTCCCTTATCAACACACCAATTTTCGCCAAAGGCTATGGAGGATACTCCATAGATCTCAAATTCGGAACCCCACCTCAAACCTCTTCTTTCGTCTTGGACACTGGAAGCAGCCTCGTCTGGTTCCCCTGTACCACACGCTACCTCTGTTCCCGTTGTAATTTCCCAAACATCGACCCAACACAAATCCCCACCTTCATTCCCAAGAATTCATCTTCCTCCAAGCTTGTAGGTTGCAGAAACCCAAAATGCGGGTTCATTTTCGGCCCTGACGTTCAATCTCGATGCCAAGGATGCAATCCAGAAGCTCAGAACTGTACACAGACTTGCCCTGCTTACATAATTCAATACGGTTTGGGCTCCACCGCTGGTTTCTTACTCTTGGAAAATCTCGATTTTCCGGGAAAAATCGTACCCGATTTTCTCGTTGGTTGTTCCATCCTCTCGATGCGTCAACCCTCCGGGATCGCCGGGTTCGGACGCGGGCCAGAGTCACTGCCATCGCAAATGGGTCTCAAGAGATTCTCTTACTGTTTACTTTCTCACCGGTTCGACGACTCACCGGAAAACAGTGACCTCATTTTGCACACTAGCTCCACCGGCGGCGCCAAGACCGATGGTGTCAGCTACACGCCGTTTCACCACAATCCATCGGCGAACAACTCTGCATTCCTCGAGTACTACTACGTGACGCTTCGGAAGGTCCTCGTCGGCGGCGAGAAAGTCAAGATTCCGTTCGAATTTCTGGAGCCGGGCTCCGACGGGAACGGCGGCACCATTGTGGATTCTGGCTCCACCTTCACCTTTATGGAAAGACCAGTATTCGATTTGGTGGCGCAAGAATTCGAGAAGCAACTTGCAAATTACACGAGAGCGAAGGAAGTTGAAGAAGAATCTGGTTTGAGACCCTGTTTCAATTTCTCCGGCGTTGAAACGGTGCCGTTTCCGGAATTGACTTTTCAATTCAAAGGTGGCGCCAAAATGACGTTACCGGTTGCCAATTATTTCTCGTTGGTCGGTGATGCGGAGGTTGTTTGTTTGACTATTATCTCCGACGGAACCGACGGTCCGGCGAAGGAGGGCGGTCCGGCGATTATCTTGGGGAACTATCAACAGCAGAATTTCTATGTTGAATATGATTTGGAAAATGATAGGTTTGGATTTAAGCCTCAGAGTTGCCAAAAGAGTGCTTAG 1401 0.4925 MAPPYILFTLSLLSLITFASSNPNTITLPLSPLFKKSPSSDLFQTLKVAASASLNRAHHLKHRKSNPAPSSLINTPIFAKGYGGYSIDLKFGTPPQTSSFVLDTGSSLVWFPCTTRYLCSRCNFPNIDPTQIPTFIPKNSSSSKLVGCRNPKCGFIFGPDVQSRCQGCNPEAQNCTQTCPAYIIQYGLGSTAGFLLLENLDFPGKIVPDFLVGCSILSMRQPSGIAGFGRGPESLPSQMGLKRFSYCLLSHRFDDSPENSDLILHTSSTGGAKTDGVSYTPFHHNPSANNSAFLEYYYVTLRKVLVGGEKVKIPFEFLEPGSDGNGGTIVDSGSTFTFMERPVFDLVAQEFEKQLANYTRAKEVEEESGLRPCFNFSGVETVPFPELTFQFKGGAKMTLPVANYFSLVGDAEVVCLTIISDGTDGPAKEGGPAIILGNYQQQNFYVEYDLENDRFGFKPQSCQKSA. 467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g04893 466 ProSiteProfiles Peptidase family A1 domain profile. 85 458 IPR033121 -
Seca2g04893 466 PANTHER OS07G0603500 PROTEIN-RELATED 30 463 - -
Seca2g04893 466 SUPERFAMILY Acid proteases 80 462 IPR021109 -
Seca2g04893 466 Gene3D Acid Proteases 266 466 IPR021109 -
Seca2g04893 466 Pfam Xylanase inhibitor N-terminal 85 252 IPR032861 -
Seca2g04893 466 FunFam Aspartyl protease family protein 268 465 - -
Seca2g04893 466 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 100 111 IPR001969 GO:0004190|GO:0006508
Seca2g04893 466 CDD pepsin_A_like_plant 84 462 IPR034161 -
Seca2g04893 466 Gene3D Acid Proteases 73 258 IPR021109 -
Seca2g04893 466 FunFam Aspartic proteinase nepenthesin-2 57 262 - -
Seca2g04893 466 Pfam Xylanase inhibitor C-terminal 297 458 IPR032799 -
Seca2g04893 466 PRINTS Pepsin (A1) aspartic protease family signature 328 339 IPR001461 GO:0004190|GO:0006508
Seca2g04893 466 PRINTS Pepsin (A1) aspartic protease family signature 434 449 IPR001461 GO:0004190|GO:0006508
Seca2g04893 466 PRINTS Pepsin (A1) aspartic protease family signature 91 111 IPR001461 GO:0004190|GO:0006508
Seca2g04893 466 Coils Coil 348 368 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g04893 Seca-Chr2 135384536 135385936 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g04893 68 464 Miscellaneous Gene Families AT1G44130 23.697 8.57e-12 64.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g04893 - - gmx:100805927 716.842
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca2g04893 2 135384536 135385936 Seca2g04893 2 135384536 135385936 ECH
Seca8g05106 8 140974482 140975879 Seca2g04893 2 135384536 135385936 PCT