Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g05019 ATGGTTCGGTTTTTGTCAAAACCCATCACGGTTCTCATCCTCTGCATTCTGGTTTTGGCTTTCTATTCCCTGCATTTCCCTTCCACTTCCCGCAACGCCTCACGCTTCTGCCACGTGTTCCTCTCCTCCTCCTCCAACACCATCATCTCCAACTACCTCCGCGCCCTCACCCTGCACCCTCACCTCGCCGGAACAAAACCCGCCGCTCAAACCGCCCGTTACGTCCGCAACCACTTCAACAACCTCGGTCTCCGAACCCGCACCGCCACCTACTCCGCCCTCCTCTCTTACCCCGTGCGCTCCTCCCTCACCGCGCACTTTAGTAACGGCTCCACCTCGGACCTCCCACTCACCGAACCGGACCGGTCCGAAGTGGTTCGGCCTTACCATGCATACTCGCCGTCCGGCTCGGTGCTTGCGAAGCTGGTGTTTGTGAACTACGGGAGGGAGGAGGACTACCGTGCACTGGCGGCGGCGGCGGTGGACGTCAGGGGGTGCGTGGTGGTGGCGAGGAGCGGCGCCGGAGGGCTGCCGCGGGGCGCGGTGGTGGAGAAGGCGGAGAGGTTCGGAGCGGCAGCGGTGCTGGTGTTCGGGGAGGGTGACACGTGGCGGGAGGGGTTTGAGCGGGGACACGTCATGAGGGGAGGAATAGGGGACCCATTGAGCCCTGGCTGGGGTGGGGTCCTTGGTGGGGAGAGTTTGGGTGTGGAGGATAGTGAGGTTTTGAAAAGGTTCCCCAAAATTCCATCCATGCCCTTGTCTGCTGAAACCGCTCAGTTGATCTTGTCCTCCCTTGGTGGTGCTTCTCTGCCTTCCAAATGGAAGGCTACCCTAAACTCCTACAACGTTAGGAATGTTGGTCCTGGCCCCACACTCCTCAATTTCTCTTATCAGGGTGAGAAGAAGGTGGTTACCATTGAAAATGTTTTTGCTGTTATTGAGGGACTGGAAGAACCTGATCGCTATGTTCTGCTGGGGAACCATAGAGATGCATGGACATATGGTGCTGTTGATCCAAGTAGTGGGACAGCTGCCCTACTTGACATTGCTCGTAGATATTCTCTTTTGTTGCGCTTGGGGTGGACTCCTAGGAGGACAATAGTTTTATGCAGTTGGGATGCAGAGGAATTTGGAATGATAGGATCCACTGAGTGGGTTGAACAAAACCTTGTTAATCTTGGTTCCAAAGCTGTAGCATACCTTAATGTAGACTGTGCTGCTCAAGGGCCTGGTTTCTTTGCTGGGTCAACTCCTCAGCTGGATAATCTCCTTCTTGAGGTCACAAAAAAGGTCAAGGATCCTGACTCTGAGGGTAAAACGATTTTTGAGAACTGGGCCGCCACTGGTGGAAACTTCAATGTAATTCAGAGGCTCAGTAGAGTTGATTCTGATTTTGTTCCATTTGTGCAACATGCAGGGATTCCATCTATTGATCTATATTATGGAAGAGATTTTCCTGTCTATCACACTGCTTTCGATTCCTATGATTGGATGACTGTGTATGGAGATCCATTCTTTCATCGCCACGTAGCTGTTGCTGGAATTTGGGGACTTCTAGCACTTCGCCTTGCTGATGATTCCATTATACCTTTCAATTATCTTTCTTATGCAGATCAGTTGCAGGTGTACAATAACATACTAAGCAACTTGTTAGATGACGAACGGATTTCTCTAGATCCACTAACTACATCAATTCAAGAATTTGCTTCTGCTGCCAGAGAAGCCGATGATGAATCAAAGAAACTGAGTTTGCCAGGGACTTCAGGTCCTTTTGTAGATATGAAAAGGCGAGCATTAAATAATAGACTAATGCTTGCTGAAAAAGGCTTCTTAGATGTGGATGGACTTCGATTTCAAGGAAAGCAGTGGTTCAAGCATCTTGTTTTTGGGCCCCCTAGTGACCATGAAAGCAAGTTGGATTTTTTCCCTGGAATTGCTGACTCCATGTCTAGGCTGATCAAAATGAGTGAAAAAGAAAGGCTGGCAGCAATTCAGCATGAGATCTGGAGGGTTGCCAGGGCCATTCAAAGAGCTGCTTCAGCACTAAGAGGAGAATTCACCTAA 2064 0.5063 MVRFLSKPITVLILCILVLAFYSLHFPSTSRNASRFCHVFLSSSSNTIISNYLRALTLHPHLAGTKPAAQTARYVRNHFNNLGLRTRTATYSALLSYPVRSSLTAHFSNGSTSDLPLTEPDRSEVVRPYHAYSPSGSVLAKLVFVNYGREEDYRALAAAAVDVRGCVVVARSGAGGLPRGAVVEKAERFGAAAVLVFGEGDTWREGFERGHVMRGGIGDPLSPGWGGVLGGESLGVEDSEVLKRFPKIPSMPLSAETAQLILSSLGGASLPSKWKATLNSYNVRNVGPGPTLLNFSYQGEKKVVTIENVFAVIEGLEEPDRYVLLGNHRDAWTYGAVDPSSGTAALLDIARRYSLLLRLGWTPRRTIVLCSWDAEEFGMIGSTEWVEQNLVNLGSKAVAYLNVDCAAQGPGFFAGSTPQLDNLLLEVTKKVKDPDSEGKTIFENWAATGGNFNVIQRLSRVDSDFVPFVQHAGIPSIDLYYGRDFPVYHTAFDSYDWMTVYGDPFFHRHVAVAGIWGLLALRLADDSIIPFNYLSYADQLQVYNNILSNLLDDERISLDPLTTSIQEFASAAREADDESKKLSLPGTSGPFVDMKRRALNNRLMLAEKGFLDVDGLRFQGKQWFKHLVFGPPSDHESKLDFFPGIADSMSRLIKMSEKERLAAIQHEIWRVARAIQRAASALRGEFT. 688
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g05019 687 PANTHER N-ACETYLATED-ALPHA-LINKED ACIDIC DIPEPTIDASE 12 684 IPR039373 -
Seca8g05019 687 FunFam Os01g0740650 protein 299 530 - -
Seca8g05019 687 Gene3D - 101 299 - -
Seca8g05019 687 Gene3D - 533 687 IPR036757 -
Seca8g05019 687 SUPERFAMILY Zn-dependent exopeptidases 50 527 - -
Seca8g05019 687 CDD M28_PSMA_like 304 531 - -
Seca8g05019 687 Pfam PA domain 140 201 IPR003137 -
Seca8g05019 687 Pfam Transferrin receptor-like dimerisation domain 556 682 IPR007365 -
Seca8g05019 687 Gene3D Zn peptidases 49 530 - -
Seca8g05019 687 FunFam N-acetylated-alpha-linked acidic dipeptidase 2 531 685 - -
Seca8g05019 687 Pfam Peptidase family M28 308 496 IPR007484 -
Seca8g05019 687 SUPERFAMILY PA domain 94 310 IPR046450 -
Seca8g05019 687 SUPERFAMILY Transferrin receptor-like dimerisation domain 530 685 IPR036757 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g05019 Seca-Chr8 139527285 139532730 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g05019 K01301 - gmx:100817485 1048.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g05019 8 139527285 139532730 Seca8g05019 8 139527285 139532730 ECH
Seca8g05019 8 139527285 139532730 Seca2g04954 2 136167585 136179630 PCT