Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g04954 ATGGCAAAACCCATTAATGTTTTTACTTCAAAGCCCTCACCTTTGAGCACTTGGGTGGTGATACTGGTTCTCTGCATTCTGGGTTTCTATGCCCTGCATTTCCCTCACTCTTCTCCACCTTCTTTCCCTCACCAAAACCTCTCTCACTTCCAAAACCTCTTCCTTTCCACTTCCTCAAACTCCACCATCGCCTCCTACCTCCGCGCCCTCACCCTACACCCTCACCTCGCTGGAACAAAACCCGCCGCCGACACCACCCACTACGTCCTCAACCACTTCACTTCCTTGGGTCTCCACACCCAAACCTCAACCTACAAAGCTCTCCTCTCCTACCCTCTACGCTCCTCCCTCTCCGCGCATTTTAGCGACGGCTCCTCCGTCGACCTCCCCCTCGCCGAACCGGCCGAACCGGGCGTGGTGCCTCCTTACCACGCGTACTCTCCGTCCGGTTCGGTTTACGCGAGGGTGGTTTTCGTGAACTATGGAAGAGAGAAGGACTATCGTGCGCTTGGGGTGAATGTTAGTGGGTGCATAGTGATAGCTAGGAAAGGTGGAAGCTTGGCGAGGAACGCGGTGGTTGAGAAGGCGGAGGAGAATGGGGCGGCGGCGGTGTTGATTTACGGTGACGGTGACACGTGGAGGAATGGGTTTGAGAGGGGTCATGTGATGAGGGGTATAGGGGACCCACTTAGCCCTGGTTGGGGTGGTGTTGATGGTGGAGAGAGCTTGGGTTTGGAAAATAGTGAGGTTTTGAAAAGGTTCCCAAAAATTCCATCCATGCCTCTTTCTGCTGACATTGCTGACACCATTTTGTCCTCGCTTGGAGGTTCTCCGGTGCCCCTGGAGTGGAGGAGCACCCTGCCATCCAAGGTCACTCATGTTGGACCTGGCCCCACAATGCTCAATTTCACTTACCAGGGTGAAAAGAAGGTGGCCACCATTCAAAATGTTTTTGCCATCATAAAGGGGTCAGAAGAACCTGATCGCTATGTTCTGCTTGGGAACCATAGAGATGCATGGACATACGGTGCTGTTGATCCCAGCAGTGGGACAGCTGCCCTACTTGATATTGCTCGTCGATATTCTATTCTATTGAGTTCGGGATGGAAGCCAAGGAGAACAATCATTCTCTGCAGTTGGGATGCAGAGGAATTTGGAATGATAGGATCCACTGAGTGGGTTGAAGAAAACCTTATGAATCTGGGTTCCAAAACTGTAGCATACCTCAATGTGGACTGCGCTGTTCAAGGACCTGGTTTCTTTGTTGGCTCAACTCCTCAGCTAGACAATCTTATTGTTGAGATCACAAGAAAGGTCAAGGATCCTGACTCTGAGGGTGTATCAGTATATGAGACTTGGGCTGCCGCTGGTGAAGGCAATAATGTAATTCAGAGGCTCAGTGGAGTCGATTCTGATTTTGCTCCGTTTGTGCAACATGCAGGGGTTCCATCTATTGATATGTATTATGGAAGAGATTTTCCTGTCTATCACACTGCTTTTGACTCCTATAACTGGATGGCAGAGTATGGAGATCCATTCTTCCAGCGCCATGTTGCTGTTACTGGAGTTTCAGGGCTTTTGGCCATTCATCTGGCTGATGATCCCATTCTTCCTTTCAATTACGTTTCATATGCAAATGAGTTACAGTCATATAAGAACATATTGAGCAACTTGCTAGACCAGAAAATTTCTCTGCAGCCATTAGCTTTGTCAATTCAAGATTTTGCTTTGGCTGCCAAAGAAGCTGATGATGAATTAAAGACACTGAGATTGCAAGAAACTGCAGGTTGTTTTGTAGACATAAAAAAGCGAGCGTTGAATGATAGACTAATGCTTACTGAAAAAGGCTTCCTGGATGCAGATGGACTTAAAGGAAGACAGTGGTTCAAGCATCTTGTGTTTGGGCCTTCCAGCGATCACGAAAAGCTGAATTTCTTCCCTGGGATTAGTGATTCTATCACTCAGTCAACAGGCATAAGTGAAGGAGAAAGGCTGGCAGCAATTCAACATGAGATCTGGAGGGTTGCCAGAGCCATTCAGAAGAAGGAAACGATGTCAGAGGATCCAATTTCGAGCTTCTGCAATGCATTGGCATCTTTCTGCAACCATCTCCACTCAACTTCTGAAGCCCTCAAACAATCCATCGATCGTCGTCCTATTCCTCTCGATTCTGCATCGTCGACGTTCGTGCAATGCCTCAACCGCCGCGTATCGAGTGCAAGCGCTGACCTCGATCTGCTCGATTCCATGTCATTCGGCACAGTCTCTTTCGAAGAGCTTCTAGGTCACTGCAACGAATTGTACAAGAAGAACCACACCGATCTTCTTGAACTCGAAGATCGTCTAAAGAGCTACGGCTATGTTTCCGTTCCAGATATTGAGGAGGAAGATGAAGTTGAGGATATACAACCTCACGTTTCGGAAGGCGGATCGGAAAGTCCGTCGTCCTTCTATGGATCACTCTCGGTTGCCGATTCTAGCTTCAAGTGTTTCGAAGAAGATGCTTTACTTGATGAATCTTTAAGTTTGAAAAAACTTGGGCTGTCAGATGCATGTCTAGCCACGTTAGCATCTGAAGGTGATTTGTCTTCACAAGAACCTGAGAAAGTGCAAGAGTTTAAGCACCTACATCAATCTATTCCGGACAAAATGATGTCATTTGAAGGAAGGGAGTTCTTATCTTATGAGGCAGACCAGAAGAATTTAAATCCAGCTGAAGCTCCAGGCTCCATTTTAAAGATACTGAATAGCGAATTTGAATGTCTTCCTGCCTACATGAAGGGTCTAACGTCATGGGAGGATCTACTTGTGGCTGTTGATAAGATTAATTCAAGCCTAAGCAAGAAGACTGATGGATGCAACTTTTTCCGGCAAGATGAAATTCCTTCATTTGAATTAGGTCCTAAAGCAAGATCATATTTGCTGCTTTTAGTGCGCATGAACCGATTGGTTGTTGAGACGATAGATGGTCTACTATCGTACAGGGTATTATAG 2994 0.4709 MAKPINVFTSKPSPLSTWVVILVLCILGFYALHFPHSSPPSFPHQNLSHFQNLFLSTSSNSTIASYLRALTLHPHLAGTKPAADTTHYVLNHFTSLGLHTQTSTYKALLSYPLRSSLSAHFSDGSSVDLPLAEPAEPGVVPPYHAYSPSGSVYARVVFVNYGREKDYRALGVNVSGCIVIARKGGSLARNAVVEKAEENGAAAVLIYGDGDTWRNGFERGHVMRGIGDPLSPGWGGVDGGESLGLENSEVLKRFPKIPSMPLSADIADTILSSLGGSPVPLEWRSTLPSKVTHVGPGPTMLNFTYQGEKKVATIQNVFAIIKGSEEPDRYVLLGNHRDAWTYGAVDPSSGTAALLDIARRYSILLSSGWKPRRTIILCSWDAEEFGMIGSTEWVEENLMNLGSKTVAYLNVDCAVQGPGFFVGSTPQLDNLIVEITRKVKDPDSEGVSVYETWAAAGEGNNVIQRLSGVDSDFAPFVQHAGVPSIDMYYGRDFPVYHTAFDSYNWMAEYGDPFFQRHVAVTGVSGLLAIHLADDPILPFNYVSYANELQSYKNILSNLLDQKISLQPLALSIQDFALAAKEADDELKTLRLQETAGCFVDIKKRALNDRLMLTEKGFLDADGLKGRQWFKHLVFGPSSDHEKLNFFPGISDSITQSTGISEGERLAAIQHEIWRVARAIQKKETMSEDPISSFCNALASFCNHLHSTSEALKQSIDRRPIPLDSASSTFVQCLNRRVSSASADLDLLDSMSFGTVSFEELLGHCNELYKKNHTDLLELEDRLKSYGYVSVPDIEEEDEVEDIQPHVSEGGSESPSSFYGSLSVADSSFKCFEEDALLDESLSLKKLGLSDACLATLASEGDLSSQEPEKVQEFKHLHQSIPDKMMSFEGREFLSYEADQKNLNPAEAPGSILKILNSEFECLPAYMKGLTSWEDLLVAVDKINSSLSKKTDGCNFFRQDEIPSFELGPKARSYLLLLVRMNRLVVETIDGLLSYRVL. 998
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g04954 997 Pfam Transferrin receptor-like dimerisation domain 563 681 IPR007365 -
Seca2g04954 997 SUPERFAMILY PA domain 108 318 IPR046450 -
Seca2g04954 997 Pfam PA domain 154 215 IPR003137 -
Seca2g04954 997 Gene3D Zn peptidases 61 538 - -
Seca2g04954 997 FunFam N-acetylated-alpha-linked acidic dipeptidase 2 539 687 - -
Seca2g04954 997 SUPERFAMILY Zn-dependent exopeptidases 58 537 - -
Seca2g04954 997 Coils Coil 572 592 - -
Seca2g04954 997 Gene3D - 115 307 - -
Seca2g04954 997 FunFam Os01g0740650 protein 307 538 - -
Seca2g04954 997 Pfam Peptidase family M28 316 504 IPR007484 -
Seca2g04954 997 SUPERFAMILY Transferrin receptor-like dimerisation domain 538 681 IPR036757 -
Seca2g04954 997 CDD M28_PSMA_like 312 539 - -
Seca2g04954 997 Gene3D - 539 685 IPR036757 -
Seca2g04954 997 Gene3D - 687 786 - -
Seca2g04954 997 PANTHER N-ACETYLATED-ALPHA-LINKED ACIDIC DIPEPTIDASE 17 685 IPR039373 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g04954 Seca-Chr2 136167585 136179630 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g04954 K01301 - gmx:100798131 1138.25
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca2g04954 2 136167585 136179630 Seca2g04954 2 136167585 136179630 ECH
Seca8g05019 8 139527285 139532730 Seca2g04954 2 136167585 136179630 PCT