Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g04960 ATGATAACAAGGTCCTCCTTTGCAAGCGGAAGATTGAACCATCTTATGGCCTATGGTATGATTGGACTTCTTATTGAACTGTGTCTTTCCATTGATTCAGGTTACATTCTGTTAGGAAACCTCCTACTGTGGGGGTGTATATGTGGAAGAATTATAGTGGAACAATGCTCCAAATGGGCAAGGGAATTAGCATGGCTGGGGACACTTCCTGCTGGTTATTTGGAAATTGGAGAGTCGGCTATGGAAGGTGCTATCAGGGAAACAAGGGAGGAAGCCAATGCTGATGTGGAAGTGATTTCTCCCTTTGCTCAGTTGGATATTCCTTTAATTGGCCAAACTTATATAATCTTCTTAGCAAGGCTGAAGAATCCCCACTTTTCACCTGGTCCAGAATCATCAGAATGCCAGCTTTTCTCGCTCAATGAAATACCTTTTAGCTCTCTATCTTTTTCATCAATGGTGGTTACTTTAGGTTTGTATGTTGAGGATATGAAGTCAGGAAAGCCCAAATTCCATTATGGCACCATTAACAAAAGGCCCGGTACTAGTCCTTCTGATATTCATGCCTATACCATGGATCATCATATGCAATTATGA 597 0.4154 MITRSSFASGRLNHLMAYGMIGLLIELCLSIDSGYILLGNLLLWGCICGRIIVEQCSKWARELAWLGTLPAGYLEIGESAMEGAIRETREEANADVEVISPFAQLDIPLIGQTYIIFLARLKNPHFSPGPESSECQLFSLNEIPFSSLSFSSMVVTLGLYVEDMKSGKPKFHYGTINKRPGTSPSDIHAYTMDHHMQL. 199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g04960 198 ProSitePatterns Nudix box signature. 72 93 IPR020084 GO:0016787
Seca8g04960 198 Gene3D Nucleoside Triphosphate Pyrophosphohydrolase 49 189 - -
Seca8g04960 198 SUPERFAMILY Nudix 63 160 IPR015797 -
Seca8g04960 198 PANTHER NUDIX HYDROLASE 23 61 191 - -
Seca8g04960 198 Pfam NUDIX domain 60 143 IPR000086 -
Seca8g04960 198 ProSiteProfiles Nudix hydrolase domain profile. 14 161 IPR000086 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g04960 Seca-Chr8 137688560 137690683 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g04960 K18453 - gmx:100777180 248.44
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g04960 8 137688560 137690683 Seca8g04960 8 137688560 137690683 ECH
Seca8g04960 8 137688560 137690683 Seca2g04136 2 124753804 124757617 PCT