Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g02968 ATGGACTCTATCTACGCGAACTCCTTATACACAGTTCCTCGCCACAACGCTCTGTCGCCACGAACCTTGATTCCTTCTTCGTCTTCTCCTTCGCTTCAGCGTAAGAAGGCATGGCGAGCGCGAATTTCGAGTTCTGCTGCAAACGGCGCCGTTCCTAGGTCGTTGCAGTTGCCGAAGAATAGCTCCAGCAGTGCGCTGGAGCAGCTCGACATCGAGCGTGGCGTCTGCATCCCTTTCCGCAAGTACTCTCCCGAGATCGTGAGGAGTAAGGTATTAGAATCAAGAGGGTCTACCTTGTCACTTATGTTGCGGGGCGTTGAGATAGTTTGGAATCTGGGCTTGTACTGGTCTAACTTGGTGTATGATTTCCTAGTTGGGAGGGATGAAGAGGTTGTTCCATATCGTGCAAGACAGCTTAGGAACCTCTTATGTGATCTGGGGCCTTCCTTTATTAAAGCCGGTCAGGTCCTTGCAAACAGGCCAGATATCATTAGAGAAGATTATATGAATGAACTTTGCATTCTTCAAGATGATGTTCCTTCATTTCCCAATGAAATTGCCTTCGGTATCATAGAGGAAGAATTGGGTCAGCCCCTTGAAGCTGTTTTCAGTAGAATCTCATCAGAGACAATAGCAGCTGCAAGTTTAGGTCAAGTTTACCGGGCTACTTTACGTGCCACTGGCGAGGATGTTGCTATCAAGGTTCAAAGGCCCGGTATAGAGCCCATAATATATCGAGATCTTTTCCTATTTCGCACTTTGGCTTCATTCTTAAATGGAATTAGTATACAGAAACTGGGGTGTAATGCTGAGCTGATTGTTGATGAATTTGGTGAAAAGCTTTTAGAAGAGCTTGACTATACCCTGGAAGCTCGCAATCTTGAAGATTTTCTTGAGAATTTTAAAAATGACCCTACTGTCAAAATTCCACGGGTTTACAAACAACTTTCTGGTTCACGTGTGTTAGTAATGGAGTGGATTGATGGTATTAGGTGCACCAATCCAAAGGCCATCAAAGAAGCTGGTCTTGATGTAGATGGATTTCTAACAATTGGTGTGAGTGCTGCCCTGCGACAATTGTTGGAATTTGGATTATTTCATGGAGACCCTCACCCTGGAAATATTTTTGCCATGCGTGATGGACGAATTGCATATGTGGACTTTGGCAATGTTGCTGTTCTTAGTCAACAAAATAAACAGATTTTAATTGATGCTGTTGTCCACGCTGTGAATGAGGATTATGCTGAGATGGCTAATGATTTCACTAGATTAGGCTTCCTATCACCAGGGACTGATGTTACTCCAATAATCCCTGCTTTAGAAGCAATTTGGCAGAACTCTGCTGGAAAAGGACTGTCAGATTTTAATTTTCGTAGTGTCACTGGAAAGTTTAACCAGTTGGTTTACAATTATCCCATTCGAATCCCAGAAAGGTTTTCGCTTGTAATCCGTTCTTTATTGACTCAAGAAGGCATCTGTTTTACTCTGAAGCCTGACTTCAAATTTCTTGAGGTTGCCTATCCATATGTGGCTAAGCGACTGCTAACAGATCCAAATCCAGCTCTACGTGAACGACTCATACAGGTTCTATTCAAAGATGGTGTTTTCCAGTGGAAACGACTTGAAAACCTTATTGTTCTTGCAAAGGAAAATGTGGCCAAGATGAGCAACAATCCAGCATTGCAAGTGAAAAACACGTCTGTATTTTATTAA 1713 0.4314 MDSIYANSLYTVPRHNALSPRTLIPSSSSPSLQRKKAWRARISSSAANGAVPRSLQLPKNSSSSALEQLDIERGVCIPFRKYSPEIVRSKVLESRGSTLSLMLRGVEIVWNLGLYWSNLVYDFLVGRDEEVVPYRARQLRNLLCDLGPSFIKAGQVLANRPDIIREDYMNELCILQDDVPSFPNEIAFGIIEEELGQPLEAVFSRISSETIAAASLGQVYRATLRATGEDVAIKVQRPGIEPIIYRDLFLFRTLASFLNGISIQKLGCNAELIVDEFGEKLLEELDYTLEARNLEDFLENFKNDPTVKIPRVYKQLSGSRVLVMEWIDGIRCTNPKAIKEAGLDVDGFLTIGVSAALRQLLEFGLFHGDPHPGNIFAMRDGRIAYVDFGNVAVLSQQNKQILIDAVVHAVNEDYAEMANDFTRLGFLSPGTDVTPIIPALEAIWQNSAGKGLSDFNFRSVTGKFNQLVYNYPIRIPERFSLVIRSLLTQEGICFTLKPDFKFLEVAYPYVAKRLLTDPNPALRERLIQVLFKDGVFQWKRLENLIVLAKENVAKMSNNPALQVKNTSVFY. 571
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g02968 570 Gene3D Transferase(Phosphotransferase) domain 1 203 406 - -
Seca8g02968 570 SUPERFAMILY Protein kinase-like (PK-like) 176 414 IPR011009 -
Seca8g02968 570 CDD ABC1_ADCK3-like 175 421 - -
Seca8g02968 570 Pfam ABC1 atypical kinase-like domain 175 419 IPR004147 -
Seca8g02968 570 PANTHER CHAPERONE-ACTIVITY OF BC1 COMPLEX CABC1 -RELATED 80 551 - -
Seca8g02968 570 ProSiteProfiles Protein kinase domain profile. 205 536 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g02968 Seca-Chr8 82577315 82584859 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g02968 - - gmx:100819754 1020.38
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g02968 8 82577315 82584859 Seca8g02968 8 82577315 82584859 ECH
Seca4g02084 4 35333621 35347390 Seca8g02968 8 82577315 82584859 PCT