Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g02432 ATGGTTGGCAAGGATAATCTGAGGACTGAGGACCTGAACTTGTGCTTTGAGAAGCTTATGATGGTTGCTGGGAGCGGGAACAGCGGGAAAGGAGGGAATATGAAGGCTGGAGTGATCACAGAATGGAAGGATATCCCTGTGGAGCTTTTGGTGCAAATTCTTTCGCTTGTGGATGATCAGACAGTGATCAAAGCTTCTGGAGTTTGTCGTGGCTGGAGAGATGCAATTTGCTTTGGCCTTGCCCGTTTATCACTCTCATGGTGTAGCAAGAACATGAATAACTTGGTCCTATCACTTGTTCCTAAATTCACAAAATTGCAAACTCTAATCCTTCGTCAAGACATGCCTCAGCTAGAGGATAATGCTGTTGAGACTATTGCAAATTGCTGTCATGACCTGCAGATCCTGGACCTCAGCAAAAGTTTCAAGCTTACTGATCGGTCACTGTATGCTGTAGCTCATGGCTGTCGTGATCTTACAAAACTGAACATCAGTGGGTGTTCAGCATTTAGTGACAATGCTCTGGCTTACCTTGCCAGTTGCTGCAGGAAACTGAAAATTCTAAATCTCTGTGGATGTGTTAAAGCGGCATCTGATACTGCATTACAGGCTATTGGTCACTACAGCAATCATTTACAGTCTTTGAACCTTGGATGGTGTGATAATGTTGGTGATGTTGGAGTGATGAGTTTAGCATATGGGTGTCCTGATCTTAGAACAATTGACTTGTGTGGCTGTGTCCGTATAACAGATGATAGTGTGATTGCTTTGGCAAACAGATGCCCCCACCTGAGGTCCCTTGGACTGTACTATTGTAAAAACATCACAGACAGGGCAATGTATTCCTTGGCACACAGCAAAGTGAATAAAAGGATGTGGGGATCTGTGAAAGGAGGGAATGATGAGGATGGGTTAAGGACTTTGAACATTAGCCAATGCACTGCACTCACCCCTTCTGCGGTTCAGGCAGTATGTGACTCATTCCCTTCTCTTCACACATGCTCAGGGAGACATTCACTCATCATGAGTGGTTGTCTCAATTTAACATCTGTGCATTGTGCCTGTGCTGTCCATGCACACCGTGTATTCACCAATTTCCCTCATCCAGCTCATTAA 1116 0.448 MVGKDNLRTEDLNLCFEKLMMVAGSGNSGKGGNMKAGVITEWKDIPVELLVQILSLVDDQTVIKASGVCRGWRDAICFGLARLSLSWCSKNMNNLVLSLVPKFTKLQTLILRQDMPQLEDNAVETIANCCHDLQILDLSKSFKLTDRSLYAVAHGCRDLTKLNISGCSAFSDNALAYLASCCRKLKILNLCGCVKAASDTALQAIGHYSNHLQSLNLGWCDNVGDVGVMSLAYGCPDLRTIDLCGCVRITDDSVIALANRCPHLRSLGLYYCKNITDRAMYSLAHSKVNKRMWGSVKGGNDEDGLRTLNISQCTALTPSAVQAVCDSFPSLHTCSGRHSLIMSGCLNLTSVHCACAVHAHRVFTNFPHPAH. 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g02432 371 Pfam F-box-like 43 76 IPR001810 GO:0005515
Seca4g02432 371 SMART LRR_CC_2 77 102 IPR006553 -
Seca4g02432 371 SMART LRR_CC_2 156 181 IPR006553 -
Seca4g02432 371 SMART LRR_CC_2 103 129 IPR006553 -
Seca4g02432 371 SMART LRR_CC_2 130 155 IPR006553 -
Seca4g02432 371 SMART LRR_CC_2 182 208 IPR006553 -
Seca4g02432 371 SMART LRR_CC_2 261 286 IPR006553 -
Seca4g02432 371 SMART LRR_CC_2 235 260 IPR006553 -
Seca4g02432 371 SMART LRR_CC_2 302 327 IPR006553 -
Seca4g02432 371 SMART LRR_CC_2 209 234 IPR006553 -
Seca4g02432 371 SUPERFAMILY RNI-like 74 286 - -
Seca4g02432 371 CDD F-box_AtSKP2-like 41 88 - -
Seca4g02432 371 SUPERFAMILY F-box domain 42 78 IPR036047 GO:0005515
Seca4g02432 371 Gene3D - 39 79 - -
Seca4g02432 371 PANTHER UNCHARACTERIZED 73 335 - -
Seca4g02432 371 FunFam F-box protein SKP2B 77 295 - -
Seca4g02432 371 Gene3D Ribonuclease Inhibitor 80 293 IPR032675 -
Seca4g02432 371 Pfam Leucine Rich repeat 261 284 IPR001611 GO:0005515
Seca4g02432 371 Pfam Leucine Rich repeat 209 232 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g02432 Seca-Chr4 41605492 41609622 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g02432 K03875 - gmx:100818928 689.493
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g02432 4 41605492 41609622 Seca4g02432 4 41605492 41609622 ECH
Seca8g02546 8 57395652 57399519 Seca4g02432 4 41605492 41609622 PCT