Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g02417 ATGGATTTGAAAAGCAGGAGGATAGCATTGCACACAGTTCTGCTCTTTCTGGTATTTTCTACCATTTTCCCACTCTCTTTCTCAGCTGCCAATCAACCCCGTAACGCCAAGAAGCCCCGCCCCTCAGCTTCTGATAATCGCCTTGGCTCCTCAGCTGTTTTTCGGGTTCAAGGGAATGTTTACCCTCTTGGGTATTATACAGTATCCCTCAGCATTGGCTATCCCCCCAAGCTTTACGACCTTGACATTGACTCAGGTAGTGACCTCACTTGGGTTCAGTGTGATGCACCATGTAAAGGTTGCACCAAGCCTAGTGATCAACTTTATAGACCCAACAACAACCTTGTGCAATGTGTGGACCAGTTGTGTGCTGTAGTTCACTTATCAACAGACCATAACTGTGCTGACCCAGATGAGCAATGTGACTATGAGGTTGAGTATGCAGATCATGGATCATCTCTGGGTGTACTAGTCCGAGACTACATTCCCCTTCAATTCACCAATGGCTCTGTGATACGCCCTAAGATAGCCTTTGGGTGTGGATATGATCAAAAGTATTCTGCTCCTACCACCCCACCTTCTACAGCAGGAGTCCTTGGCCTTGGCAATGGCAGAGCGAGCATTTTGTCTCAACTTCATTCTCTTGGTCTGATTCGCAATGTGGTTGGCCACTGCTTAAGTGGGAGAGGAGGAGGGTTTTTATTCTTTGGAGATGATCTCATTCCCTCATCAGAAATTGTTTGGACATCCATGTCCCCTGGTTCTTCAGAAAAACACTACAGCGCAGGACCAGCAGAACTGCTTTTCAATGGAAAGCCTTCTTCTGTTAAGGGTCTTGAACTTATCTTTGATAGCGGGAGCTCTTACACATACTTTAATTCCCAAGCTTATCAAGCTATTGTTGATCTGGTAACTAATGATTTAAAGGGAAAACTAAAAAGAGCAACCGAGGATCCATCACTTCCAATTTGTTGGAAGGGTGCAAAGTCTTTCAAATCTTTAAGTGATGTCAAGAACTATTTCAAGCCCCTAGCATTGAGCTTTACAAAATCAAAGAATTTGCAGATGCTATTACAACCAGAAGCTTATCTTATTGTCACCAAACATGGCAATGTCTGCTTTGGGATTTTAGATGGCACTGAAGTAGGACTAGGAAATCTTAACATAATAGGAGACATCTCTTTACAAGATAAAATGGTGATTTATGACAATGAGAGACAGCGGATTGGATGGGTTTCTTCCAATTGTGACAGGCTTCCCAATATGGATCGTGATTTTGAAGGTGGCTTTTCACACCCATATGCAGGCAGTATCTTTGCAGACAGGTGCCCTGCATCTTATGAAGTATCAGACAGTCAATGA 1362 0.4369 MDLKSRRIALHTVLLFLVFSTIFPLSFSAANQPRNAKKPRPSASDNRLGSSAVFRVQGNVYPLGYYTVSLSIGYPPKLYDLDIDSGSDLTWVQCDAPCKGCTKPSDQLYRPNNNLVQCVDQLCAVVHLSTDHNCADPDEQCDYEVEYADHGSSLGVLVRDYIPLQFTNGSVIRPKIAFGCGYDQKYSAPTTPPSTAGVLGLGNGRASILSQLHSLGLIRNVVGHCLSGRGGGFLFFGDDLIPSSEIVWTSMSPGSSEKHYSAGPAELLFNGKPSSVKGLELIFDSGSSYTYFNSQAYQAIVDLVTNDLKGKLKRATEDPSLPICWKGAKSFKSLSDVKNYFKPLALSFTKSKNLQMLLQPEAYLIVTKHGNVCFGILDGTEVGLGNLNIIGDISLQDKMVIYDNERQRIGWVSSNCDRLPNMDRDFEGGFSHPYAGSIFADRCPASYEVSDSQ. 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g02417 453 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 281 292 IPR001969 GO:0004190|GO:0006508
Seca8g02417 453 PANTHER ASPARTYL PROTEASES 44 410 IPR001461 GO:0004190|GO:0006508
Seca8g02417 453 Gene3D Acid Proteases 42 238 IPR021109 -
Seca8g02417 453 FunFam Aspartyl protease family protein 42 238 - -
Seca8g02417 453 Pfam Xylanase inhibitor C-terminal 280 411 IPR032799 -
Seca8g02417 453 ProSiteProfiles Peptidase family A1 domain profile. 66 412 IPR033121 -
Seca8g02417 453 Gene3D Acid Proteases 240 423 IPR021109 -
Seca8g02417 453 PRINTS Pepsin (A1) aspartic protease family signature 72 92 IPR001461 GO:0004190|GO:0006508
Seca8g02417 453 PRINTS Pepsin (A1) aspartic protease family signature 388 403 IPR001461 GO:0004190|GO:0006508
Seca8g02417 453 PRINTS Pepsin (A1) aspartic protease family signature 281 292 IPR001461 GO:0004190|GO:0006508
Seca8g02417 453 FunFam Aspartic proteinase Asp1 isoform A 242 420 - -
Seca8g02417 453 SUPERFAMILY Acid proteases 58 421 IPR021109 -
Seca8g02417 453 Pfam Xylanase inhibitor N-terminal 66 238 IPR032861 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g02417 Seca-Chr8 51622859 51625772 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g02417 50 420 Miscellaneous Gene Families AT1G44130 60.054 1.34e-171 486
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g02417 - - aprc:113846122 768.074
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g02417 8 51622859 51625772 Seca8g02417 8 51622859 51625772 ECH
Seca8g02417 8 51622859 51625772 Seca4g01890 4 31805279 31808951 PCT