Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g01890 ATGAAGTCATCATCAGCGAAGTTGGGATTCTTGGTGCTGCTACTCTTCTTGAGCTCCTCTGTTTGTGCAGCTTGGTTTGGTAATAAACACAAAACTAGTCCCAATGCAAATGCAAGAAACTCCATTCTTCCACATGAAGCCTCCTCCTCTTCCTCATCATCGTCATCAACATTCCTAAACCGTTTTCGTTCTGGTTCATCCATCGTGTTCCCTGTTCATGGCAACGTTTACCCTGTTGGGTTTTATAATGTTACTCTCAACATTGGCACCCCACCTAGGCCATATTTTCTTGATATTGACACTGGTAGCGACCTCACATGGCTTCAATGTGATGCCCCTTGTTCCCGTTGCACTCAGACACCCCATCCTCTTTATAGGCCTAGCAATGATTTAGTGGCCTGCAGGCATCCCCTCTGTGTATCCTTGCACCAGAATGATAACTATGACTGTGAATCCCCACATCAATGTGACTATGAAGTTGAGTATGCAGATCATTACTCATCCCTTGGTGTACTTGTCAATGATGTCTACGTTCTCAACTTTACAAATGGAGTCCAACTTAAAGTTCGTATGGCACTTGGATGTGGATATGATCAGATTTTTCCAGATTCTTCTTACAACCCTGTAGATGGAATGCTTGGCCTTGGCAGGGGAAGATCCAGCTTGATATCACAGCTGAATAGTCAGGGTTTGGTGAGAAATGTAGTTGGACATTGTTTGAGTGCACAAGGAGGAGGGTATATCTTCTTTGGAGATGTTTATGATTCTTCTCGATTGACTTGGACTCCAATGTCATCTAGAGTGAAATCGATTTGTCTCAGCAAACATTACTCAGCAGGGGCAGCTGAACTCATTTTTGGAGGGAAGAGGACCGGATTTGGAAATCTTCATGCTATTTTTGACACTGGGAGTTCTTACACTTACTTCAACTCTCATGCTTACCAAGCATTAATTTCTTGGCTGAAGAAGGAATTAGCTGGAAAGCCCCTCAAAGAAGCACCAGATGACCAAACTGTCCCTCTTTGTTGGCATGGTAAAAGACCTTTCAGAAGCATATATGAAGTCAGAAAATACTTCAAGCCTATAGCTCTTAGTTTCACCAACAGTGGGAGAAGTAAAGCTCAGTTTGAAATCCCTCCTGAAGCATATCTGATAATATCAAACATGGGAAATGTTTGCTTGGGCATTCTAGATGGCTCTGAAGTAGGGATGGATGATATAAACCTCATTGGAGACATATCCATGCTAGACAAAGTGATGGTATTTGACAATGAGAAGCAGTTGATTGGTTGGGCACCAGCAGATTGTAACCGGGTTCCAAAATCCAGAGATGTCAGCATTTGA 1344 0.4286 MKSSSAKLGFLVLLLFLSSSVCAAWFGNKHKTSPNANARNSILPHEASSSSSSSSSTFLNRFRSGSSIVFPVHGNVYPVGFYNVTLNIGTPPRPYFLDIDTGSDLTWLQCDAPCSRCTQTPHPLYRPSNDLVACRHPLCVSLHQNDNYDCESPHQCDYEVEYADHYSSLGVLVNDVYVLNFTNGVQLKVRMALGCGYDQIFPDSSYNPVDGMLGLGRGRSSLISQLNSQGLVRNVVGHCLSAQGGGYIFFGDVYDSSRLTWTPMSSRVKSICLSKHYSAGAAELIFGGKRTGFGNLHAIFDTGSSYTYFNSHAYQALISWLKKELAGKPLKEAPDDQTVPLCWHGKRPFRSIYEVRKYFKPIALSFTNSGRSKAQFEIPPEAYLIISNMGNVCLGILDGSEVGMDDINLIGDISMLDKVMVFDNEKQLIGWAPADCNRVPKSRDVSI. 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g01890 447 Gene3D Acid Proteases 59 250 IPR021109 -
Seca4g01890 447 FunFam Aspartyl protease family protein 59 252 - -
Seca4g01890 447 FunFam Aspartic proteinase Asp1 isoform A 255 440 - -
Seca4g01890 447 ProSiteProfiles Peptidase family A1 domain profile. 82 432 IPR033121 -
Seca4g01890 447 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 298 309 IPR001969 GO:0004190|GO:0006508
Seca4g01890 447 SUPERFAMILY Acid proteases 74 439 IPR021109 -
Seca4g01890 447 Pfam Xylanase inhibitor C-terminal 294 432 IPR032799 -
Seca4g01890 447 PRINTS Pepsin (A1) aspartic protease family signature 298 309 IPR001461 GO:0004190|GO:0006508
Seca4g01890 447 PRINTS Pepsin (A1) aspartic protease family signature 88 108 IPR001461 GO:0004190|GO:0006508
Seca4g01890 447 PRINTS Pepsin (A1) aspartic protease family signature 408 423 IPR001461 GO:0004190|GO:0006508
Seca4g01890 447 Gene3D Acid Proteases 251 440 IPR021109 -
Seca4g01890 447 Pfam Xylanase inhibitor N-terminal 82 252 IPR032861 -
Seca4g01890 447 PANTHER ASPARTYL PROTEASES 16 430 IPR001461 GO:0004190|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g01890 Seca-Chr4 31805279 31808951 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g01890 50 442 Miscellaneous Gene Families AT1G44130 51.263 5.41e-147 423
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g01890 - - gmx:100812524 729.169
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g02417 8 51622859 51625772 Seca4g01890 4 31805279 31808951 PCT