Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g02072 ATGGAAAATAAAGAGCCAGTGGAGATAAATGATGCAAGTCCTCGAGATGTTGGACAGCTAGAAGGAGATGCTTTTACTGTTCAGAATGAAGTATCAAAGGGGGTGAAGACTCAAACAACTGACCATGATGGCCCTGAGTTTGGAAGTGAACATGATATATTAGACAAGATTAGTTCTCAAGATGGTGAAAAGCTGGAAGGAGATGCTTTTACCGTTCACAATGAAGATCATGACAAAGACTTAGAGAAGGTGAAAGTTCGAGATATTGGTCATGATGGCCCTGAGTTTGGAAGTGAACATGATATATTAGACAAGATTAGTTCTCAAGATGGTGAAAAGCTGGAAGGAGATGCTTTTACAGTTCACAATGAAGATCATGACAAAGACTTAGAGAAGGTGAAAGTTCGAGATATTGGTCATGATGGCCCTGAGTTTGACAATGAACAAGATGAAATGCCAGACAAGATGAGTTCCCAAGCTGTTGAAAAGTTGGAAGGAGATGCTTTTACTATTCAAAATGAAGTTCATGACAAAGAATCGAAGGAGGTGGAAATTCAACATGTTGGTCATGATGGCCCGGGGTTTGACAAAGAGCCAGATGATATATCAGACAATATATATGAGGAAATAGATGTAAAGTCGAATACTCATGAGGAGGTGAAAGAGAATGTGACTGGAGAATCTGAGTTGGCTCAGAGGCTAGATGAGAGTAGGGATTTGCAGTGTGGACCTCAAGAAGAAAACTTGGAGACCAGTAGTAATAGTGTTTCTGATGGCATGTTTCAAAAGGTGCATGAGAGTAATTCCATGAAATCTGAAATTCAAGTCAATATTATTGGACACGAGTGTTCTGGTGTTAACATGGACAGGGGTGGAGATTTTGAGTCTAAAAGTCAAGAAGTAAATGTAGATAATAATTTTGGATATAATGACTTGGCCAAAGAGAAGGATGACAGAAGAAGCATGGAATCAACACAAATGAATCAAAAGACAGATAACACTTCAAATGAGGACAATAATTTGGAGCCTGTATTTGATCAAACAGAAGTTCTTGGGGTGGAAGTTAGCCAGAGCACATCTAGCTCTACTTTGGATGCCGATCCAGGGACTCCACATGTGGTTGGGACGGCTGTATCTCTTAAAAATTTTGTTAGGGAGAAAAGTTTAGTAGCAGTCTCCAATTTTCTACGTCTCCTTTCTGGAAAAACTGATGAAGGTGCTGTGCATAATTCTGATGATGTAGGGAAGGATGTTACAGATTTATCAAGAGACAGTGAATCCAAAGAGGTTTCTGAGAAGACAGCGGAGAAAACGACTTGGAACCCCTTAAATTATATTAAAATGTCATCTGATGTTGATGCAGAAAATAAAACTGATCAGAGGGAGGAACTGATAACTGAAGGTCCACTGCAACCGATAGCCATGAAAGGAAGGATTATACTGTACACAAGACTAGGGTGCCAAGAATCTAAAGAGGTTAGGCAATTTTTGTATACAAAAAGGTTTAGATATGTTGAAATCAACATTGATGTGTACCCCAGTAGAAAGATGGAGCTGGAGAAGATTTCTGGATCTGCTTCTGTTCCCAAGGTTTTTTTCAATGAAATACTTATTGGAGGCTTGAGTGAGCTAAAAACCTTAAATGAGTCTGGCAAGCTTAATGAGAAGATTGACTTTCTTATTACTGAAGCACCATCATTTGAAGGCCCATTTCCACCACTGTCTGGAGAGGATGATGTATCCAGTAGTGGGGCAATTGATGAAATGGCTCTAATTGTCCGCAAAATGAAAGAATCTATTGTTGTAAGGGACCGATTTAGGAAAATGCGAAGGTTCACAAACTGCTTTATTGGCTCTGAAGCTGTGGACTTCTTATCAGAAGATCAATATTTGGAAAGGAAAGAGGCCTTTTGTGCTTCAGGTTGCAGCAATGGCTCTCAACAATCAACATTAATTCCTGCAACTGCTGTTGAGTTTGGACGAAAGCTTGCTAGCAAACTCTTCTTTCAGCATGTTCTTGATGAGAATCTATTTGAGGATGGCAATCACTTCTATCGGTTTTTGGATGATGATCCAATTGTGGCATCTCAGTGTCACAACATTCCCAGGGGTATAATTACTGTGAAACCTAAGTCTATAACAGAAATTGCATCAAGGCTGAGGTTTTTGTCCTATGCAATGTTTGAAGCCTATGCCTCTGAAGATGGACGTCATGTTGATTACAGAAGTATGCATGGAAGTGAGGAATTTGCAAGGTATCTAAGAATAGCAGAGGAGCTCCAAAGAGTGGAAATATGGGATATGTCCAGAGAAGAGAAGCTTGCTTTCTTTATTAATTTATATAATATGATGACCATCCATGCAATCTTAGTATCGGGTCATCCAGCTGGAGCACTGGAACGAAGGAAATTGTTTGGGGACTTCAAATATATCATTGGTGGGTGCACCTATTCACTTTCAGCTATTCAGAACGGCATTTTGAGGGGGAACCAACGACCACCATATACCCTTATGAAGATATTTGGTGCAAAAGATAAACGTTCCAGGGTGACCCTCTCTTTCCCTGAGCCTCTTGTTCATTTTGCTTTAGTATATGGTACTCGATCTGGGCCAGCACTTCGATGCTATTCTCCTGGAGACATCGATAAAGAATTAATGGATGCAGCCAGTAATTTCTTAAGAATTGGGGGCCTTTTAGTAGACTTTACTGCAAAGGTTGCATATGCCAGTAAGATCCTTAAATGGTTTAGTGTAGATTTTGGCAAGAGTGAGATAGAGGTACTGAAGCATGTGTCAAACTACTTAGATCCTGCTGACTCAGAATTATTACTGGACATGCTTGCCACTTCTGAGTTTAAGGTGATATATCAGCCTTATGACTGGGGTTTGAATTGCTAG 2898 0.3996 MENKEPVEINDASPRDVGQLEGDAFTVQNEVSKGVKTQTTDHDGPEFGSEHDILDKISSQDGEKLEGDAFTVHNEDHDKDLEKVKVRDIGHDGPEFGSEHDILDKISSQDGEKLEGDAFTVHNEDHDKDLEKVKVRDIGHDGPEFDNEQDEMPDKMSSQAVEKLEGDAFTIQNEVHDKESKEVEIQHVGHDGPGFDKEPDDISDNIYEEIDVKSNTHEEVKENVTGESELAQRLDESRDLQCGPQEENLETSSNSVSDGMFQKVHESNSMKSEIQVNIIGHECSGVNMDRGGDFESKSQEVNVDNNFGYNDLAKEKDDRRSMESTQMNQKTDNTSNEDNNLEPVFDQTEVLGVEVSQSTSSSTLDADPGTPHVVGTAVSLKNFVREKSLVAVSNFLRLLSGKTDEGAVHNSDDVGKDVTDLSRDSESKEVSEKTAEKTTWNPLNYIKMSSDVDAENKTDQREELITEGPLQPIAMKGRIILYTRLGCQESKEVRQFLYTKRFRYVEINIDVYPSRKMELEKISGSASVPKVFFNEILIGGLSELKTLNESGKLNEKIDFLITEAPSFEGPFPPLSGEDDVSSSGAIDEMALIVRKMKESIVVRDRFRKMRRFTNCFIGSEAVDFLSEDQYLERKEAFCASGCSNGSQQSTLIPATAVEFGRKLASKLFFQHVLDENLFEDGNHFYRFLDDDPIVASQCHNIPRGIITVKPKSITEIASRLRFLSYAMFEAYASEDGRHVDYRSMHGSEEFARYLRIAEELQRVEIWDMSREEKLAFFINLYNMMTIHAILVSGHPAGALERRKLFGDFKYIIGGCTYSLSAIQNGILRGNQRPPYTLMKIFGAKDKRSRVTLSFPEPLVHFALVYGTRSGPALRCYSPGDIDKELMDAASNFLRIGGLLVDFTAKVAYASKILKWFSVDFGKSEIEVLKHVSNYLDPADSELLLDMLATSEFKVIYQPYDWGLNC. 966
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g02072 965 CDD DEP 592 686 - -
Seca8g02072 965 Pfam Glutaredoxin 479 535 IPR002109 -
Seca8g02072 965 MobiDBLite consensus disorder prediction 175 202 - -
Seca8g02072 965 MobiDBLite consensus disorder prediction 406 434 - -
Seca8g02072 965 MobiDBLite consensus disorder prediction 36 51 - -
Seca8g02072 965 MobiDBLite consensus disorder prediction 138 160 - -
Seca8g02072 965 MobiDBLite consensus disorder prediction 215 257 - -
Seca8g02072 965 SUPERFAMILY Thioredoxin-like 472 557 IPR036249 -
Seca8g02072 965 MobiDBLite consensus disorder prediction 310 325 - -
Seca8g02072 965 MobiDBLite consensus disorder prediction 1 51 - -
Seca8g02072 965 Gene3D - 581 694 IPR036388 -
Seca8g02072 965 ProSiteProfiles DEP domain profile. 596 689 IPR000591 GO:0035556
Seca8g02072 965 PANTHER ELECTRON CARRIER/ PROTEIN DISULFIDE OXIDOREDUCTASE 158 965 - -
Seca8g02072 965 MobiDBLite consensus disorder prediction 309 340 - -
Seca8g02072 965 Pfam Protein of unknown function, DUF547 767 893 IPR006869 -
Seca8g02072 965 SUPERFAMILY "Winged helix" DNA-binding domain 589 696 IPR036390 -
Seca8g02072 965 MobiDBLite consensus disorder prediction 215 243 - -
Seca8g02072 965 MobiDBLite consensus disorder prediction 326 340 - -
Seca8g02072 965 SMART DEP_3 596 689 IPR000591 GO:0035556
Seca8g02072 965 Gene3D Glutaredoxin 474 559 - -
Seca8g02072 965 ProSiteProfiles Glutaredoxin domain profile. 467 564 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g02072 Seca-Chr8 44705348 44712514 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g02072 - - ccaj:109814814 1199.88
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g02072 8 44705348 44712514 Seca8g02072 8 44705348 44712514 ECH
Seca8g02072 8 44705348 44712514 Seca4g02748 4 47182576 47188031 PCT