Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g02748 ATGGAAAATCAACAGTTGGTGGAGTCAAAGGAAGCAAGCTCTCAAGATGTTGAGAAGCTGCAAGTAGATGCTTCTGCCATTCAAAATGAAGATCAGGATAAACAATCAAAAGAGGCAAAAGCTCAGAATATTGGCCATGATGGCCCTGGGTTTGACAATGAACTAGATGATGTATCGGATGTGAAATCTAAGTCTAATAATCATGAGGGAGTAAGTGACAATGTCATTGGAGAATCTGAATTGGCTCAGAGGAAAGATGAGAGTAGGGATTTGCAGTCTGGAACTCAACAAGAAAACATAGGGACCAAGTCTGAAACTGAAGTTAATACTGTTGGACAAGAGTATTCTGGTGATAAGGTGGATGCCAGTGGAGATTTTGAGCATAAAAGTGAAGAAACAAATCCAGATAATAATTCTGGACAGCATGACTTGGCTAAAGAAAAGGATGACAGTGGAGACATGGAATCAACACACATGTATGAGAAGACGGATGAAATTCCAAATGAGGACCACATTTTGGAGCCTGTATTTGATGGAACAGAGATTCCAGGGATGGAAGCTAACCGTAGCACATCTACCCGTAAATCAGATGCAGATCAAGACTCCCCAGGTGTGGTTGAGAAGGCAGTAGCTCTTAAAAATTTTGTTAAGGAGAAAAGTGCAGTAGCAGTCTCCACTATGCTGCGCCGCCTTTCTGGCAAAAGGGATGAAGGTGCTGTGGGTAATTCTGATGATGAAGGCAAGGATGTTTCAGACATCTCAAAAGTTGGTGAAACCAAAGTGGATTCTGAGAAGCCAGTGGAGAAATTTGGCTGGAATCCCTTAAATTATATCAAGAAGTCTTCTGATGTTGATGTGGAAAGCAAAACTGAGCAGAGGGATTCAATAAAAGAAGGTCTACCACCACCCATAGCCATGAAAGGAAGGATTATACTGTACACAAAACTAGGGTGCCAAGAATCTAAAGAGATTAGGCTATTTTTACGTATGAAAAGGCTTGGATATGTGGAAATCAACATAGATGTATACCCCAGTAGAAAGATGGAGCTGGAAAAGGTTTCTGGATCTACTTCTGTTCCCAAGGTTTATTTCAATGAAATACTTATTGGGGGCTTGAGTGCGCTAAAGACCTTAGATGAGTCTGGAAAGCTTGATGAGAAGATTGACTTTCTTATTACTGAAGCACCATTGTTTGAAACCCCATCACCACCACTTTCTGGAGAGGATGATGTGTCCAGTAGTGGGGTGCTTGATGAAATGGCCCTTATTGTGCGTAAAATGAAAGAATCTGTTGCTGTGAAGGACCGGTTGTACAAAATGCGCAGGTTCACTAACTGTTTTCTGGGCTCAGAAGCTGTAGACTTCTTATCAGAAGATCAATATTTGGAAAGGCAAGAGGCTGTTGATTTTGCACGAAAGCTTGCTAGCAAACTCTTCTTTCGACATGTTCTTGATGAGGATCTGTTTGAGGATGGTAATCACTTGTATCGGTTTTTGGATGATGATCCAATCGTGGTGTCACAATGTCACAACATTCCTAGGGGCATAATTACCACCAAGCCCAAGCCTATAGCTGAAATTGCATCAAGGCTATGGTTTCTGTCCCTTGCAATGTTTGAAGCCTATGTTTCTGAAGATGGACGTCATGTTGATTATACAAGTATGCATGGAAGTGAAGAGTTCGCAAGGTATCTGAGAATTGTCGAAGAGCTCCAAAGAGTGGAAATATGGGATTTGTCTAGAGAAGAGAAGCTTGCATTCTTTATTAATCTTTATAATATGATGGCCATCCATGCAATATTGGTATTGGGTCATCCAGATGGACCTCTGGAAAGAAGGAAATTATTTGGAGAGTTCAAATATGTTATTGGTGGGTCCACCTACTCACTTTCAGCTATTCAAAATGGCATATTGAGGGGAAACCAGCGACCACCATATAACATTAAGAAGCCATTTGGTGCAAAAGATAAACGCTCAAAGGTGGCACTCCCTTACCCTGAGCCTCTTATTCATTTTGCTTTGGTATATGGTACCCGATCTGGGCCTGCACTTCGGTGCTATTCTCCTAGAAACATTGATGAAGAACTATTGGATGCAGCTCGTAATTTCTTGAGAAGTGGAGGCGTTGTAATTGATTTGGCTGCAAAGTCTGCATATGCTAGTAAGATCCTAAAATGGTACAGTATAGATTTTGGCAAGAGCGAGGTAGAGGTGATCAAGCATGTGTCAAACTATTTAGATCCAGCTGACTCGGAAATATTATTGGACCTGCTTGCTACTTCTGAGCTGAAGGTGACATATCAGCCTTATGACTGGGGTTTGAACTGCTAG 2331 0.4148 MENQQLVESKEASSQDVEKLQVDASAIQNEDQDKQSKEAKAQNIGHDGPGFDNELDDVSDVKSKSNNHEGVSDNVIGESELAQRKDESRDLQSGTQQENIGTKSETEVNTVGQEYSGDKVDASGDFEHKSEETNPDNNSGQHDLAKEKDDSGDMESTHMYEKTDEIPNEDHILEPVFDGTEIPGMEANRSTSTRKSDADQDSPGVVEKAVALKNFVKEKSAVAVSTMLRRLSGKRDEGAVGNSDDEGKDVSDISKVGETKVDSEKPVEKFGWNPLNYIKKSSDVDVESKTEQRDSIKEGLPPPIAMKGRIILYTKLGCQESKEIRLFLRMKRLGYVEINIDVYPSRKMELEKVSGSTSVPKVYFNEILIGGLSALKTLDESGKLDEKIDFLITEAPLFETPSPPLSGEDDVSSSGVLDEMALIVRKMKESVAVKDRLYKMRRFTNCFLGSEAVDFLSEDQYLERQEAVDFARKLASKLFFRHVLDEDLFEDGNHLYRFLDDDPIVVSQCHNIPRGIITTKPKPIAEIASRLWFLSLAMFEAYVSEDGRHVDYTSMHGSEEFARYLRIVEELQRVEIWDLSREEKLAFFINLYNMMAIHAILVLGHPDGPLERRKLFGEFKYVIGGSTYSLSAIQNGILRGNQRPPYNIKKPFGAKDKRSKVALPYPEPLIHFALVYGTRSGPALRCYSPRNIDEELLDAARNFLRSGGVVIDLAAKSAYASKILKWYSIDFGKSEVEVIKHVSNYLDPADSEILLDLLATSELKVTYQPYDWGLNC. 777
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g02748 776 Pfam Glutaredoxin 310 366 IPR002109 -
Seca4g02748 776 Pfam Protein of unknown function, DUF547 578 704 IPR006869 -
Seca4g02748 776 Gene3D - 413 504 IPR036388 -
Seca4g02748 776 ProSiteProfiles DEP domain profile. 427 500 IPR000591 GO:0035556
Seca4g02748 776 MobiDBLite consensus disorder prediction 50 67 - -
Seca4g02748 776 SUPERFAMILY Thioredoxin-like 307 389 IPR036249 -
Seca4g02748 776 SMART DEP_3 427 500 IPR000591 GO:0035556
Seca4g02748 776 CDD DEP 423 497 - -
Seca4g02748 776 SUPERFAMILY "Winged helix" DNA-binding domain 418 504 IPR036390 -
Seca4g02748 776 ProSiteProfiles Glutaredoxin domain profile. 298 395 - -
Seca4g02748 776 MobiDBLite consensus disorder prediction 93 113 - -
Seca4g02748 776 Pfam Domain found in Dishevelled, Egl-10, and Pleckstrin (DEP) 431 498 IPR000591 GO:0035556
Seca4g02748 776 MobiDBLite consensus disorder prediction 1 203 - -
Seca4g02748 776 Gene3D Glutaredoxin 305 390 - -
Seca4g02748 776 Coils Coil 10 30 - -
Seca4g02748 776 PANTHER ELECTRON CARRIER/ PROTEIN DISULFIDE OXIDOREDUCTASE 33 776 - -
Seca4g02748 776 MobiDBLite consensus disorder prediction 120 176 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g02748 Seca-Chr4 47182576 47188031 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g02748 - - tpra:123896937 1190.25
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g02748 4 47182576 47188031 Seca4g02748 4 47182576 47188031 ECH
Seca8g02072 8 44705348 44712514 Seca4g02748 4 47182576 47188031 PCT