Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g02031 ATGTTCCCGTCCAACAGACGGAGACGCGGGTCTTTTATAAACCTTTCTACATGCTCTGCTCTGCAACCTGCACTTCCCATTCCATCACTCAGCATGGCCCTCTCATCCCTTCCCATCACGTTTTTCTCTCTCCTTCTCCTTACTCACCACCAACTCGCTCACGCCGAGTCAACTCAGCCACCTTATGCTTGTCATGCCGAGTCCTCCACCACATCCTACGCCTTCTGCAATCGCAACCTTCTCATCAGTCAGAGAGCCAAAGACCTCGTGTCACGACTCACACTGGACGAGAAACTCGCCCAACTCGTTAACTCAGCTCCCTCCATTCCCCGACTCGGTATCCCCAGTTACCAGTGGTGGAGCGAAGCCTTGCACGGCGTTGCTGATGCTGGCTTTGGAATTAGATTCAATGGCACTATCAAATCTGCCACTAGCTTCCCTCAAGTTATTCTCACTGCTGCTTCTTTCGATTCCAACCTCTGGTACCAAATCAGTAAGGTGATTGGGAAGGAAGCTAGAGCAGTGTATAATGCAGGGCAAGCTCAGGGGATGACGTTTTGGGCTCCAAACATTAACATTTTCAGGGACCCAAGATGGGGAAGAGGACAAGAGACAGCAGGGGAAGACCCTATGGTGAATGCTAAGTATGCTGTGGCCTATGTCAGAGGACTTCAAGGGGATTCCTTTGAGGGAGGGAAACTCGGAGAGCGTCTTCAAGCTTCAGCTTGTTGCAAACACTTTACTGCTTATGATTTGGATAATTGGAAGGGTTTGGATCGCTTTCGATGCTCGTGTAAGGTCACTATGCAAGATATGGCGGATACTTATCAGCCCCCATTTCAGAGTTGCATACAGCAAGGACGATCAAGTGGAATAATGTGTGCATACAACCGTGTCAATGGTGTCCCAAACTGTGCAGATTTCAATCTGCTAACCAAAACCGCAAGAAAACAATGGAATTTCTACGGGTATATTACTTCGGATTGTGGAGCAGTCGATATCATACATGAAAAGCAAGGTTATGCAAAAACAGCAGAGGACGCTGTAGCCGATGTCCTTAGGGCAGGGATGGATGTGGAGTGTGGTAGTTACTTGACTAAGCATGCTAAATCAGCAGTGCTGCAGAAAAAAGTACCTATATCTCAAATTGACCGTGCACTTCAGAATCTGTTCTCTATTAGAATGAGGCTAGGCCTATTTGATGGAAATCCTGCCAAGCTCACATTTGGTTCAATTGGTCCTGATCAAGTCTGCTCCAAACAAAACCTACAACTAGCTCTTGATGCTGCAAGAAATGGCATTGTCCTTTTGAAGAACACTGACTCACTCCTCCCACTTCCAAAAACAAACCCCAGTCTCGCAGTTATAGGCCCCAATGCAAATGCTTCATCTCCAGTTGTTCTAGGAAACTATTATGGCCGTCCTTGTAAATTGGTGACTCTATTGCAAGGCTTTCAGCACTATGCTAAGGACACTATTTATCATCCTGGCTGTAGTGATGGAACACAGTGTGCCTCCGCTGAAATAAACCAGGCAGTGGAAGTTGCAAAGAAAGTGGATTATGTGGTGTTGGTTATGGGATTGGATCAAAGTCAAGAGAGGGAATCACATGATAGAGAGCAGCTAGAGTTGCCAGGCAAGCAACAGGAACTCATCAACAGTGTTGCCAAGGCTTCTAAAAGGCCAGTTATTTTGGTCCTCTTGTGTGGAGGCCCTGTAGATATCACTTCAGCCAAGTTTGACAATAAAATTGGAGGCATCTTGTGGGCTGGTTATCCAGGGGAACTTGGAGGAGTGGCCCTGGCCCAGATTATCTTTGGTGACCATAATCCAGGAGGAAGACTACCAATTACTTGGTACCCAAAAGATTTCATCAGAGTACCAATGACAGACATGAGGATGAGAGCTGATCCAGCATCAGGCTATCCAGGGAGAACCTACCGATTTTACACAGGTCCAAAGGTGTATGAATTTGGCTATGGCCTAAGCTACTCAAAATATTCCTATGAGTTCATCTCTGCCACACAAAACAATCTTCACATCAACCAATCATCCACTCATTTAATGGTTGAAAATTCTGAAACCATCCGTTACAAATTGGTCTCAGAGTTGGGTGAAGAAACATGCCAAAGCATGTCTGTTTCAGTCACTTTGGGTGTAACAAATCATGGAAGCATGGTGGGGAAGCACCCGGTGTTGCTGTTCATGAAACAGGCAAAGCAGAGAAATGGAAATCCAGTGAAACAGTTAGTGGGTTTTCAAAGTGTGAAGCTCGATGCAGGTGAAAAGGCTCAATTGGGGTTTGAGCTAAGCCCATGTGAGCATCTTAGCAAAGCAAATGAGGCTGGTTTAAAGGTTATAGAAGAGGGGTTTTATTTTTTGCTTGTGGGGGATGAAGAATACCCAATAAATGTCACTGTCTGA 2424 0.4592 MFPSNRRRRGSFINLSTCSALQPALPIPSLSMALSSLPITFFSLLLLTHHQLAHAESTQPPYACHAESSTTSYAFCNRNLLISQRAKDLVSRLTLDEKLAQLVNSAPSIPRLGIPSYQWWSEALHGVADAGFGIRFNGTIKSATSFPQVILTAASFDSNLWYQISKVIGKEARAVYNAGQAQGMTFWAPNINIFRDPRWGRGQETAGEDPMVNAKYAVAYVRGLQGDSFEGGKLGERLQASACCKHFTAYDLDNWKGLDRFRCSCKVTMQDMADTYQPPFQSCIQQGRSSGIMCAYNRVNGVPNCADFNLLTKTARKQWNFYGYITSDCGAVDIIHEKQGYAKTAEDAVADVLRAGMDVECGSYLTKHAKSAVLQKKVPISQIDRALQNLFSIRMRLGLFDGNPAKLTFGSIGPDQVCSKQNLQLALDAARNGIVLLKNTDSLLPLPKTNPSLAVIGPNANASSPVVLGNYYGRPCKLVTLLQGFQHYAKDTIYHPGCSDGTQCASAEINQAVEVAKKVDYVVLVMGLDQSQERESHDREQLELPGKQQELINSVAKASKRPVILVLLCGGPVDITSAKFDNKIGGILWAGYPGELGGVALAQIIFGDHNPGGRLPITWYPKDFIRVPMTDMRMRADPASGYPGRTYRFYTGPKVYEFGYGLSYSKYSYEFISATQNNLHINQSSTHLMVENSETIRYKLVSELGEETCQSMSVSVTLGVTNHGSMVGKHPVLLFMKQAKQRNGNPVKQLVGFQSVKLDAGEKAQLGFELSPCEHLSKANEAGLKVIEEGFYFLLVGDEEYPINVTV. 808
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g02031 807 SUPERFAMILY (Trans)glycosidases 73 432 IPR017853 -
Seca8g02031 807 Pfam Fibronectin type III-like domain 732 798 IPR026891 -
Seca8g02031 807 Gene3D Immunoglobulins 693 806 IPR013783 -
Seca8g02031 807 PRINTS Glycosyl hydrolase family 3 signature 240 256 IPR001764 GO:0004553|GO:0005975
Seca8g02031 807 PRINTS Glycosyl hydrolase family 3 signature 314 332 IPR001764 GO:0004553|GO:0005975
Seca8g02031 807 PRINTS Glycosyl hydrolase family 3 signature 146 165 IPR001764 GO:0004553|GO:0005975
Seca8g02031 807 Gene3D - 420 665 IPR036881 GO:0004553|GO:0005975
Seca8g02031 807 PANTHER SUGAR HYDROLASE-RELATED 53 803 IPR044993 GO:0009044|GO:0045493
Seca8g02031 807 FunFam probable beta-D-xylosidase 2 419 665 - -
Seca8g02031 807 SUPERFAMILY Beta-D-glucan exohydrolase, C-terminal domain 434 667 IPR036881 GO:0004553|GO:0005975
Seca8g02031 807 FunFam probable beta-D-xylosidase 7 85 406 - -
Seca8g02031 807 SMART Fn3_like_2 730 800 IPR026891 -
Seca8g02031 807 Gene3D - 85 408 IPR036962 GO:0004553|GO:0005975
Seca8g02031 807 Pfam Glycosyl hydrolase family 3 N terminal domain 139 391 IPR001764 GO:0004553|GO:0005975
Seca8g02031 807 Pfam Glycosyl hydrolase family 3 C-terminal domain 434 664 IPR002772 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g02031 Seca-Chr8 43376878 43382327 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g02031 56 807 Glycoside Hydrolase AT1G78060 64.729 0.0 1014
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g02031 - - gmx:100780688 1326.61
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g02031 8 43376878 43382327 Seca8g02031 8 43376878 43382327 ECH
Seca8g02031 8 43376878 43382327 Seca4g02776 4 47851208 47856463 PCT