Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g02776 ATGGAATATCAGTTTCACACTATGCCCCTCTCACTCTCACCAAACTTTACCTTTGTCACCATCCTTTTTCTCACTCTCACTCTTACTTTCTTCACTCACAACTTGGTCCATGCCCAGCCACCTCCTTTTGCTTGCGATTGGTCGAACCCATCCTCCAGATCCTACCCATTTTGCAACCCCAAGCTTCCCATCACTCAACGAACCAGAGACCTTGTCTCCAGGCTCACATTGGACGAGAAACTCGCCCAACTCGTTAACTCAGCCCCTCCCATTCCCCGACTCGGTATCCCCGGTTACCAGTGGTGGAGTGAAGCACTTCATGGTGTTGGCAACGTTGGTCGTGGCATCCGTTTCAATGGCACTATCACATCTGCAACTAGCTTCCCTCAAGTTATCCTCACTGCAGCTACCTTCGATTCCCACCTCTGGTACCGAATCGCTCAGGCGATTGGAATTGAAGCTAGAGCAATCTACAATGCTGGACAAGCTATGGGGATGACATTCTGGGCTCCTAACATTAACATATTCAGGGACCCCAGATGGGGTAGAGGACAAGAAACAGCTGGTGAAGACCCTCTGGTCACTTCCAACTATGCTGTTTCCTATGTCAGAGGACTTCAAGGGGATTCCTTTCAGGGAGGGAAATTGAGGGGCCACCTTCAAGCTTCAGCTTGTTGCAAGCATTTTACTGCCTATGATTTGGACAATTGGAAAGGCGTTAATCGCTTTGTCTTTGATGCTCGCGTCACTTTGCAAGATTTAGCAGACACATACCAGCCTCCATTTCAGAGTTGTGTACAGAAAGGACGAGCTAGTGGGGTAATGTGTGCTTACAATCGTGTCAATGGGGTTCCCAACTGTGCAGATTACAATCTGTTAACCAAAACCACCAGAAAACAATGGAATTTCCATGGGTATATTGTGTCGGATTGTGGAGCAGTTGGGATCATACAAGGCGAGCAAGGGTATGCAAAATCACCAGAGGATGCTGTAGCGGATGTTATTGGGGCTGGGATGGATTTGGAATGTGGTACATATTTGAATGACCATGCTAAATCAGCAGTGTTGCAGAAAAAGTTACCTATATCTCAAATAGACCGTGCCCTTCACAATTTATTTTCTATTAGAATAAGGCTAGGCCTATTTGATGGAAATCCAACAAGGCTCTCATTTGGCATGATTGGCCCCAATCATGTGTGTTCCAAAGAGCACCAATATCTAGCTCTTGAAGCTGCAAGAAACGGCATTGTCCTTTTGAAGAACTCTGCTAGACTTCTCCCACTTCCAAAAACAAGCCCCAGTATTTCCTTAGCAGTGATAGGTCCTAATGCCAATGCTTCCCCTCTAACTCTTCTAGGAAACTATGCTGGCCCTCCTTGTAAATTCATGACAATATTGCAAGGGTTTCAGCACTATGTTAAGAACACTGTTTTTCATCCTGGCTGTGATGGTGGACCAAAGTGTGCCTCTGCCCAAATAGACCAGGCAGTGGAAGTTGCCAAAAAAGTGGATTATGTTGTGCTGGTTATGGGATTGGATCAAAGTCAAGAGAGGGAAGAACGTGATCGTATTCACCTTGACTTGCCAGGCAAGCAACTGGAACTCATCAACAGTGTTGCCAAAGCTTCTAAACGACCAGTTATTTTGGTGCTTCTTTGTGGAGGCCCTGTTGATATCAGTTCAGCCAAGTATGACAACAAAATTGGAGGTATCCTTTGGGCTGGTTATCCAGGGGAACTTGGAGGCATTGCACTTGCACAGATTATCTTTGGTGACCACAACCCAGGGGGAAGGCTACCAATCACTTGGTATCCAAAAGATTACATCAAAGTGCCAATGACAGACATGAGGATGCGAGCTGATCCCTCAACCGGCTATCCCGGGAGAACTTACCGATTCTATAAGGGTCCTAAGGTGTATGAATTTGGTTATGGACTAAGCTACTCAAAATATTCATATGAGTTTGTTTCTGTTACACATGACAAGCTTCACTTCAATCAATCATCCACTCATTTGATGGTTGAAAATTCAGAAACCATCAGGTACAAGTTAGTTTCAGAGTTGGGAGAAGAAACCTGCCAAAGCATGTCAGTCTCAGTCACAGTGGGAGTTAAAAATCATGGAAGCATGGTGGGGAAGCATCCTGTATTGCTGTTTATGAGGCCAGGAAAACAGAGAAGTGGAAGTCCTGTTAAACAGTTGGTGGGTTTTCAGAGTGTGATGCTAGATGCAGGGGAAAGGACTCAAGTTGGATTTGAGCTAAGCCCTTGTGAGCATCTTAGTAGAGCAAACGAGGCTGGTTCAAAGGTCATAGAAGAAGGGTCTCATTTGTTGCTTGTGGGTGATGAAGAGTACCCGATAGATATCATTGTCTGA 2376 0.455 MEYQFHTMPLSLSPNFTFVTILFLTLTLTFFTHNLVHAQPPPFACDWSNPSSRSYPFCNPKLPITQRTRDLVSRLTLDEKLAQLVNSAPPIPRLGIPGYQWWSEALHGVGNVGRGIRFNGTITSATSFPQVILTAATFDSHLWYRIAQAIGIEARAIYNAGQAMGMTFWAPNINIFRDPRWGRGQETAGEDPLVTSNYAVSYVRGLQGDSFQGGKLRGHLQASACCKHFTAYDLDNWKGVNRFVFDARVTLQDLADTYQPPFQSCVQKGRASGVMCAYNRVNGVPNCADYNLLTKTTRKQWNFHGYIVSDCGAVGIIQGEQGYAKSPEDAVADVIGAGMDLECGTYLNDHAKSAVLQKKLPISQIDRALHNLFSIRIRLGLFDGNPTRLSFGMIGPNHVCSKEHQYLALEAARNGIVLLKNSARLLPLPKTSPSISLAVIGPNANASPLTLLGNYAGPPCKFMTILQGFQHYVKNTVFHPGCDGGPKCASAQIDQAVEVAKKVDYVVLVMGLDQSQEREERDRIHLDLPGKQLELINSVAKASKRPVILVLLCGGPVDISSAKYDNKIGGILWAGYPGELGGIALAQIIFGDHNPGGRLPITWYPKDYIKVPMTDMRMRADPSTGYPGRTYRFYKGPKVYEFGYGLSYSKYSYEFVSVTHDKLHFNQSSTHLMVENSETIRYKLVSELGEETCQSMSVSVTVGVKNHGSMVGKHPVLLFMRPGKQRSGSPVKQLVGFQSVMLDAGERTQVGFELSPCEHLSRANEAGSKVIEEGSHLLLVGDEEYPIDIIV. 792
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g02776 791 SUPERFAMILY (Trans)glycosidases 55 414 IPR017853 -
Seca4g02776 791 PRINTS Glycosyl hydrolase family 3 signature 296 314 IPR001764 GO:0004553|GO:0005975
Seca4g02776 791 PRINTS Glycosyl hydrolase family 3 signature 128 147 IPR001764 GO:0004553|GO:0005975
Seca4g02776 791 PRINTS Glycosyl hydrolase family 3 signature 222 238 IPR001764 GO:0004553|GO:0005975
Seca4g02776 791 FunFam probable beta-D-xylosidase 7 67 388 - -
Seca4g02776 791 FunFam probable beta-D-xylosidase 2 401 649 - -
Seca4g02776 791 Gene3D Immunoglobulins 677 789 IPR013783 -
Seca4g02776 791 Pfam Fibronectin type III-like domain 716 782 IPR026891 -
Seca4g02776 791 Pfam Glycosyl hydrolase family 3 C-terminal domain 416 648 IPR002772 GO:0004553|GO:0005975
Seca4g02776 791 Pfam Glycosyl hydrolase family 3 N terminal domain 122 372 IPR001764 GO:0004553|GO:0005975
Seca4g02776 791 SMART Fn3_like_2 714 784 IPR026891 -
Seca4g02776 791 Gene3D - 67 389 IPR036962 GO:0004553|GO:0005975
Seca4g02776 791 PANTHER SUGAR HYDROLASE-RELATED 38 787 IPR044993 GO:0009044|GO:0045493
Seca4g02776 791 Gene3D - 401 649 IPR036881 GO:0004553|GO:0005975
Seca4g02776 791 SUPERFAMILY Beta-D-glucan exohydrolase, C-terminal domain 416 651 IPR036881 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g02776 Seca-Chr4 47851208 47856463 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g02776 30 791 Glycoside Hydrolase AT1G78060 65.359 0.0 1035
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g02776 - - aprc:113867121 1440.63
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g02776 4 47851208 47856463 Seca4g02776 4 47851208 47856463 ECH
Seca8g02031 8 43376878 43382327 Seca4g02776 4 47851208 47856463 PCT