Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g02019 ATGGCAATGAAGGCTAAGAGCAACAAGATGGGGAATGAATTTGGTTGTGGTTTCATGGGGAGAATTCTCCAATTCAAAAGCCACAGGTTGAGAAACTCAACAGTTCATTCACTACCAATGAAGGGTAGCAACAATGCACAGAACGATCATAGCAAAAATGAACCAAAGAAGTCTCCAAAAGAAGAACCAAAAAGAAGCTCCACCGACATTGAGCCACAAAAACTGAGTGGAGACCAGAAACATGCCAGAAAGAGAACCAATCAGAATTGGAGGCATTCAGATGCTGCAAGAAGCTCAACATCATCATCCACTAGTAGTTCAACACACACAAAGATTCAGATTCAACAACAAAACCATGACATGGGAAATTCTCTGCAACTTGCTAGGATAAGTACTAGTCACAAGGTAGACAGTGAGAGCAACAAATCACCAGCAAAAGACTCTGCTACCTTGAGACTCACTGGGAATTTGCTTGGAAATAACACCCCAAGAAGAAAGAGTGTGGAATTCATGCCTAAGAGTTCAGAGTTGAATTCTGTGAAATGTTCTTATAGCAGTAATGCAAGCAAAGGAGTGATGGGGAATATCATGAGGAAGAATAGCAATGAGCTTGCACAGTTTCTAACTCCAAGGCAAAGCAGGGTGGACCCTGAGGTGTTGAAGTCTATGGGAAATGAAGCTTATAAGAAGGGAAGATTTGAAGAGGCTTTGGCTTTGTATGACAGAGCAATTGCTCTTGATTCAAATAAGGCAACTTATCATTGCAACAAGAGTGCAGCTTTAATTGGCTTAGGAAGATTTCAAGAAGCAATTTTTGAGTGTGAGGAATCTATCAGGCTTGACCCTTATTATAACAGAGCTCATAACCGTTTGGCAACAATATATTTCAGGTTAGGAGAAGCAGAAAAAGCACTTGGTTGCAATCAGTCAAGTTTATATGCAGATTCCGTACTCAATTCCCAAGCTCAGGCTCTTCAGAATCACCTTAAAAAATGCACTGAAGCTAGGAAAGTCAATGAATGGAGTGTTATACTAAAGGAAACACAGTCTGCACTATCTTTAGGTGCTGATTCATCTCCACAGATCTATGCTTTACAAACTGAAGCCTTGCTGAAGCTCCTAAGATACCAAGAGGCGTATGCAACCTATGATAAAAGGCCAAAATTTTCACTTGATTGGTGTAACAAGATATTTGGCATGGCTACTAGTGCTTACCTGTTGATGATAGGTGCACAGATTTACTTGGCATCCGGCAGGTTTGAGGATGCTGTGACAGCAGCTCAGCAAGCAGCTAAAGTTGATCCAAGCAACAGAGAGCTGAATGCAATGGTAAGAAGAGCCAGAGCAGCAACATCAGCTAGAATGAGTGGAAACTTACTCTTCAAGGCATCAAAATTCATGGAAGCATGTGCTGTATACAATGAAGGACTAGAGCATGATCCACACAACTCAGTTCTTCTATGCAATAGAGCAGCATGTCGTTCAAAGCTAGGCCAATATGAGAAAGCAATTGAAGATTGCAATGCAGCACTTATTGTTCAACCATGTTATAGCAAAGCAAGGCTAAGAAGGGCTGATTGCAATGCCAAGTTGGAAAGATGGGAAGCTGCAATTCAAGACTATGAAGTGCTGATAAGAGAAAAGCCAGGGGATGAGGAAGTGGCTAGGGCTTTGTTTGAGGCTCAGCTTCAACTCAAGATGCTACGTGGAGAAGATATTAAGGACTTGAAATTTGGTTCAAATTTGGTTTTCATCTCAAGTAATGATAGGTTCAGACATTATGTAACCTCACCTGGGATGGCTGTAGTGCTCTTTAGCAACAAAGCAACCCACAAGCAAGTGTTATTGGTGTTGGAACAAACCAGCAAGAGATTTCCATCAGTTCATTTCCTCAAGGTGGAGATTGAAGACCACCCTTACTTAGCAAAATCAGAAGGTGTGAGTTCTGTCCCAGCTTTCAAAATATACAAGAATGGATCCAGGGTTAAAGAAATTTCAGGCAACAACCATGAGATGTTAGAAAGATCAGTTAAATTGTATAGCAGCTGA 2049 0.4119 MAMKAKSNKMGNEFGCGFMGRILQFKSHRLRNSTVHSLPMKGSNNAQNDHSKNEPKKSPKEEPKRSSTDIEPQKLSGDQKHARKRTNQNWRHSDAARSSTSSSTSSSTHTKIQIQQQNHDMGNSLQLARISTSHKVDSESNKSPAKDSATLRLTGNLLGNNTPRRKSVEFMPKSSELNSVKCSYSSNASKGVMGNIMRKNSNELAQFLTPRQSRVDPEVLKSMGNEAYKKGRFEEALALYDRAIALDSNKATYHCNKSAALIGLGRFQEAIFECEESIRLDPYYNRAHNRLATIYFRLGEAEKALGCNQSSLYADSVLNSQAQALQNHLKKCTEARKVNEWSVILKETQSALSLGADSSPQIYALQTEALLKLLRYQEAYATYDKRPKFSLDWCNKIFGMATSAYLLMIGAQIYLASGRFEDAVTAAQQAAKVDPSNRELNAMVRRARAATSARMSGNLLFKASKFMEACAVYNEGLEHDPHNSVLLCNRAACRSKLGQYEKAIEDCNAALIVQPCYSKARLRRADCNAKLERWEAAIQDYEVLIREKPGDEEVARALFEAQLQLKMLRGEDIKDLKFGSNLVFISSNDRFRHYVTSPGMAVVLFSNKATHKQVLLVLEQTSKRFPSVHFLKVEIEDHPYLAKSEGVSSVPAFKIYKNGSRVKEISGNNHEMLERSVKLYSS. 683
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g02019 682 ProSiteProfiles TPR repeat profile. 404 437 IPR019734 GO:0005515
Seca8g02019 682 Coils Coil 524 544 - -
Seca8g02019 682 Pfam Thioredoxin 612 675 IPR013766 -
Seca8g02019 682 SUPERFAMILY Thioredoxin-like 568 676 IPR036249 -
Seca8g02019 682 SUPERFAMILY TPR-like 215 558 IPR011990 GO:0005515
Seca8g02019 682 SMART tpr_5 484 517 IPR019734 GO:0005515
Seca8g02019 682 SMART tpr_5 217 250 IPR019734 GO:0005515
Seca8g02019 682 SMART tpr_5 251 284 IPR019734 GO:0005515
Seca8g02019 682 SMART tpr_5 285 318 IPR019734 GO:0005515
Seca8g02019 682 SMART tpr_5 404 437 IPR019734 GO:0005515
Seca8g02019 682 SMART tpr_5 518 551 IPR019734 GO:0005515
Seca8g02019 682 SMART tpr_5 450 483 IPR019734 GO:0005515
Seca8g02019 682 Pfam Tetratricopeptide repeat 411 483 - -
Seca8g02019 682 MobiDBLite consensus disorder prediction 50 91 - -
Seca8g02019 682 CDD TRX_family 591 678 - -
Seca8g02019 682 Gene3D Tetratricopeptide repeat domain 215 569 IPR011990 GO:0005515
Seca8g02019 682 ProSiteProfiles TPR repeat profile. 217 250 IPR019734 GO:0005515
Seca8g02019 682 MobiDBLite consensus disorder prediction 35 118 - -
Seca8g02019 682 MobiDBLite consensus disorder prediction 35 49 - -
Seca8g02019 682 Pfam Tetratricopeptide repeat 486 515 IPR001440 GO:0005515
Seca8g02019 682 Gene3D Glutaredoxin 577 681 - -
Seca8g02019 682 Pfam TPR repeat 224 259 - -
Seca8g02019 682 MobiDBLite consensus disorder prediction 92 118 - -
Seca8g02019 682 PANTHER TPR REPEAT-CONTAINING THIOREDOXIN 4 678 IPR044534 -
Seca8g02019 682 Pfam Tetratricopeptide repeat 287 312 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g02019 Seca-Chr8 42927794 42931577 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g02019 205 438 Glycosyltransferase AT3G11540 24.481 3.32e-06 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g02019 K09527 - gmx:100782846 983.015
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g02019 8 42927794 42931577 Seca4g02786 4 48055559 48059233 PCT