Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g02786 ATGGAAGGGAAAGCCAAGAACAAGTTGGAGGTTGAATTGGGGTGCGGTTACATAGGGAGAATTTTCAGTCTCAAAAGCAATAAGCTAAGAAAATCATCTGTTCATTCATTACCCATGAAGGGTAGCCAAAATGGCCAAAAACAGAGCGATCAGAGCAAAAACGAATCAAACAAATCTCCAAATCATGAACCAAAGGTTCCAACTTCAAGAAACACCTCCAATGATGCTGTGGTCCCCACAGAGCCGAAAGGGGAACAGAATCCATCAAGAAAGAGCACTTCTAGTTACCGACCACCTTCTTCTGCACACCGAAATGGGAGACCTTCAGATGCAGCAAGAAGCTCAATTCAACAGAATCATGACTCAAACGAAGAGAGCAAGCAACAGAGAGATCCCACTATGGAACTTGCTAGGATAAGTACTAGTCACCAGCGAGATAACAACGAGAGCAAATCCCCATCTAAAGATTTGGGCACCTTGAAACTCACTGGGAATTTGCTTGTCAGTAACAGCCCAAGAACTAGTCTTTCCAAGAATAAAGAGTTGAACTCTATGTCCAGTAATGCAAATAAAGGCGTAATGGGGAATATCATGAGAAAGAGCAGTGATGAGCTTGCGCAATTTCGAAGTCCAAGGACCAACAGAGTAGACCCTGAGGCGTTAAAATCCATGGGAAATGAAGCATACAAACAGGGAAGATTTGCAGAGGCTTTGGCTTTGTATGACAGAGCCATTGCTCTTGACTCTAATAAAGCAACATATCATTGCAATAAGAGTGCAGCTTTAATTGGGTTGGGACGGTTGCAGCAGGGAATTGTTGAGTGCGAGGAAGCTATAAGGTTGGAACCTTCATATGGCAGAGCTCATAGCCGTTTGGCAACAATATATTTCAGATTGGGAGAAGCAGAGAAGGCATTGAATTGCAATCAAGCAACCCCATATGTTGATTCTGAACTCGCTTTCCAAGCTCAGGCTCTTCAAAATCACCTTAACAAATGCACTGAAGCAAGAAAAGTTAATGACTGGAAAGTTATACTAAAGGAGACACAGTCTGCAATATCCCTAGGTGCTGATTCAGCTCCTCAGGTGTATGCTTTACAAACTGAAGCCTTATTGAAGCTCCTGAGACATCAAGAGGCATATGCCACGTATGAGAAAATGCCAAAATTTGATCTTGATTGGTGTAACAAATCATTTGGCGTGGTTCGTAGTGCTTACCTTTTGATGATAAGAGCACAAGTTTACTTGGCAGCTGGCAGGTTTGAGGATGCTGTGAAAGCATCTCAACAAGCAGCTAAACTTGATCCAAGCAACTGTGAGTTGAATGCAGTGGTGAGGAGGGCCAGAGCAGTGACATCAGCCAGAATGAGTGGTAACTTACTCTTCAAGGCATCAAAATTCATGGAAGCATGTGCAGTGTACAATGAAGGACTAGAGCATGATCCACACAACTCAGTTCTACTATGTAACAGGGCAGCATGTCGTTCTAAGCTAGGCCAATTTGAGAAAGCAATTGAAGATTGTAATGTAGCCCTCACAGTTCAGCCTAGTTATAGCAAGGCAAGGTTGCGGAGAGCTGATTGCAATGCTAAGTTGGAACGATGGGAAGCTGCCATTCAAGATTATGAAATGCTATTAAGAGAAAAGCCAGGGGATGAGGAGGTGGCAAGGGCTCTGTTTGAGACCCAACTACAACTCAAGATGCTGCGTGGTGAAGATATTAAGGACTTGAAATTTGGTTCAAATTTGGTTTTCATCTCAAGCAATGATCGGTTTAGACATTATGTAACCTCACCTGGGATGTCTGTGGTGCTCTTTTGCAACAAGGCAACCCACAAACAAGTATTGCTGGTGTTGGAGCAAACCTGCAAGAGATTCCCATCAGTTAATTTCCTTAAGGTGGAGATTGAAGACCACCCCTTTTTGGCAAAATCAGAAGGTGTGAACTCCGTCCCAGCCTTCAAAATATACAAGAACGGATCAAGGGTTAAAGAAATTCCAGGCAACAAGCATGAGTTGCTAGAAAGATCAGTTAAATTATATATCAGCTGA 2052 0.4298 MEGKAKNKLEVELGCGYIGRIFSLKSNKLRKSSVHSLPMKGSQNGQKQSDQSKNESNKSPNHEPKVPTSRNTSNDAVVPTEPKGEQNPSRKSTSSYRPPSSAHRNGRPSDAARSSIQQNHDSNEESKQQRDPTMELARISTSHQRDNNESKSPSKDLGTLKLTGNLLVSNSPRTSLSKNKELNSMSSNANKGVMGNIMRKSSDELAQFRSPRTNRVDPEALKSMGNEAYKQGRFAEALALYDRAIALDSNKATYHCNKSAALIGLGRLQQGIVECEEAIRLEPSYGRAHSRLATIYFRLGEAEKALNCNQATPYVDSELAFQAQALQNHLNKCTEARKVNDWKVILKETQSAISLGADSAPQVYALQTEALLKLLRHQEAYATYEKMPKFDLDWCNKSFGVVRSAYLLMIRAQVYLAAGRFEDAVKASQQAAKLDPSNCELNAVVRRARAVTSARMSGNLLFKASKFMEACAVYNEGLEHDPHNSVLLCNRAACRSKLGQFEKAIEDCNVALTVQPSYSKARLRRADCNAKLERWEAAIQDYEMLLREKPGDEEVARALFETQLQLKMLRGEDIKDLKFGSNLVFISSNDRFRHYVTSPGMSVVLFCNKATHKQVLLVLEQTCKRFPSVNFLKVEIEDHPFLAKSEGVNSVPAFKIYKNGSRVKEIPGNKHELLERSVKLYIS. 684
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g02786 683 PANTHER TPR REPEAT-CONTAINING THIOREDOXIN 16 679 IPR044534 -
Seca4g02786 683 MobiDBLite consensus disorder prediction 153 193 - -
Seca4g02786 683 Pfam Tetratricopeptide repeat 497 552 - -
Seca4g02786 683 Pfam Tetratricopeptide repeat 412 484 - -
Seca4g02786 683 Gene3D Tetratricopeptide repeat domain 216 570 IPR011990 GO:0005515
Seca4g02786 683 Gene3D Glutaredoxin 578 682 - -
Seca4g02786 683 SMART tpr_5 519 552 IPR019734 GO:0005515
Seca4g02786 683 SMART tpr_5 451 484 IPR019734 GO:0005515
Seca4g02786 683 SMART tpr_5 485 518 IPR019734 GO:0005515
Seca4g02786 683 SMART tpr_5 252 285 IPR019734 GO:0005515
Seca4g02786 683 SMART tpr_5 286 319 IPR019734 GO:0005515
Seca4g02786 683 SMART tpr_5 405 438 IPR019734 GO:0005515
Seca4g02786 683 SMART tpr_5 218 251 IPR019734 GO:0005515
Seca4g02786 683 Coils Coil 525 545 - -
Seca4g02786 683 ProSiteProfiles TPR repeat profile. 218 251 IPR019734 GO:0005515
Seca4g02786 683 ProSiteProfiles TPR repeat profile. 405 438 IPR019734 GO:0005515
Seca4g02786 683 MobiDBLite consensus disorder prediction 22 193 - -
Seca4g02786 683 Pfam Thioredoxin 613 674 IPR013766 -
Seca4g02786 683 Pfam TPR repeat 225 260 - -
Seca4g02786 683 CDD TRX_family 592 675 - -
Seca4g02786 683 SUPERFAMILY TPR-like 456 567 IPR011990 GO:0005515
Seca4g02786 683 MobiDBLite consensus disorder prediction 26 122 - -
Seca4g02786 683 SUPERFAMILY TPR-like 217 440 IPR011990 GO:0005515
Seca4g02786 683 SUPERFAMILY Thioredoxin-like 569 677 IPR036249 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g02786 Seca-Chr4 48055559 48059233 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g02786 K09527 - gmx:100814381 1051.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g02786 4 48055559 48059233 Seca4g02786 4 48055559 48059233 ECH
Seca8g02019 8 42927794 42931577 Seca4g02786 4 48055559 48059233 PCT