Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g01995 ATGTCAGGTAGTGGATGCAGCATAGTTTGGTTCAGAAGAGATCTGAGGGTAGAGGATAACCCAGCACTTGCAGCAGGAGTAAGAGCAGGAGCTGTTGTTGCTGTTTTCATATGGGCACCTGAAGAAGAAGGTCAATACTATCCTGGTAGGGTCTCAAGATGGTGGCTAAAACACAGTTTGGCTCACCTTGATTCTTCTTTGAGAAGCCTTGGAACTCCTCTTATCACCAAAAGATCAACTGATAGTGTTTCTTCTCTCTTGGAGGTTGTTAAGTCCACTGGAGCCACTCAAATCTTTTTCAACCATTTATATGATCCATTGTCACTTGTGAGGGATCACAGAGCAAAGGAGGTTCTGACGGCTCAAGGCATTACCGTACGTTCCTTCAATTCAGATTTATTGTATGAACCGTGGGATGTCAATGATGCTCATGGCCAACCATTCACAACTTTTACTGCTTTTTGGGAAAGATGCCTTAGCATGCCTTATGACCCACAAGCACCTCTTCTCCCACCTAAAAGGATTATTCCAGGTGATGTATCAAGGTGCCCTAGTGATACATTGGTGTTTGAAGATGAATCAGAGAAAGCAAGCAATGCACTTCTTGCTAGAGCATGGTCACCAGGGTGGAGCAATGCTGACAAGGCTTTAACAACATTTATAAATGGTCCACTGATTGAGTACTCAAAGAATCGCAGGAAGGCTGATAGTGCCACAACCTCATTTCTCTCCCCACATTTGCATTTTGGTGAGGTGAGTGTCAAGAAAGTTTTCCATCTTGTCCGCATTAAGCAAGTCTTATGGGCCAATGAAGGAAACATAGCAGGTGAAGAAAGTGTGAACTTGTTTCTCAAGTCTATTGGTCTTAGAGAGTACTCAAGGTACATTAGTTTCAACCATCCTTATAGTCATGAAAGGCCTCTTCTAGGCCACCTTAAGTTTTTCCCTTGGGTAGTAAATGAGAGCCATTTCAAGGCATGGAGACAAGGCAGAACTGGCTACCCTTTGGTGGATGCTGGAATGAGAGAGTTGTGGGCTACTGGTTGGCTGCATGATAGGATTCGAGTTGTTGTTTCAAGTTTCTTTGTGAAGGTTCTGCAGCTTCCTTGGAGATGGGGGATGAAATATTTTTGGGATACCCTTTTGGATGCGGATCTTGAGAGTGATGCTCTTGGTTGGCAATACATATCTGGTACTCTACCTGATGGTCGTGAATTTGACAGAATAGATAATCCACAGTTTGAGGGGTACAAATTTGATCCAAATGGAGAATATGTACGGCGCTGGCTTCCTGAACTTGCAAGATTACCAACTGAATGGATACATCATCCATGGAATGCACCAGAATGTGTACTCCAAGCTGCTGGAATTGAACTTGGGTCAAACTACCCTCTTCCAATTGTAGAAATAGATGCAGCAAAAGCAAGATTGCAAGAAGCACTTATACAAATGTGGCAACAAGAAGCAGCTTCAAGAGCTGCAATGGAGAATGGAACTGAGGAAGGGCTTGGAGACTCTGAATCAACCCCTATTGCTTTTCCTCGAGACATACAAATGGAAGAAAGACATGAACCTATTAGGAACAATCCCCCTCACGGTACTAGGCGCTATGAGGATCAGATGGTACCTAGTATCACTTCTTCCCATGTAAGAGTGGAAGAGGAAGAAAATTCTTCAGATCTTCGAAACATAAGAGAAGATAGCAGAGCTGAAGTGCCAATAAATGCAAATGCACAGCAAAATGCAAGAGAGACAGTGAATCAAGGAGTGTTGCAGCATGTAAATAGAAACACTCGAGTACAATATAATACTACAATGTGGCTGAGAAATGCAGCTGAAGATTCCACAGCAGAATCTTCAAGTAGTACTAGGAGAGAAAGGGATGGAGGTGTAGTTCCAGTGTGGTCTCCACCAGCTTCTAACTTCTCAGAGCAATTTGTAGATGATGAAAATGGTATAGGAGCCAGTTCATCTTACTTGCAAAGGCATCCTCAGTCTCACCAATTGGTGAATTGGACACGGCTACCTCAGACTGGGTGA 2040 0.4343 MSGSGCSIVWFRRDLRVEDNPALAAGVRAGAVVAVFIWAPEEEGQYYPGRVSRWWLKHSLAHLDSSLRSLGTPLITKRSTDSVSSLLEVVKSTGATQIFFNHLYDPLSLVRDHRAKEVLTAQGITVRSFNSDLLYEPWDVNDAHGQPFTTFTAFWERCLSMPYDPQAPLLPPKRIIPGDVSRCPSDTLVFEDESEKASNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSFLSPHLHFGEVSVKKVFHLVRIKQVLWANEGNIAGEESVNLFLKSIGLREYSRYISFNHPYSHERPLLGHLKFFPWVVNESHFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTLPDGREFDRIDNPQFEGYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPECVLQAAGIELGSNYPLPIVEIDAAKARLQEALIQMWQQEAASRAAMENGTEEGLGDSESTPIAFPRDIQMEERHEPIRNNPPHGTRRYEDQMVPSITSSHVRVEEEENSSDLRNIREDSRAEVPINANAQQNARETVNQGVLQHVNRNTRVQYNTTMWLRNAAEDSTAESSSSTRRERDGGVVPVWSPPASNFSEQFVDDENGIGASSSYLQRHPQSHQLVNWTRLPQTG. 680
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g01995 679 MobiDBLite consensus disorder prediction 520 534 - -
Seca8g01995 679 SUPERFAMILY Cryptochrome/photolyase, N-terminal domain 7 178 IPR036155 -
Seca8g01995 679 MobiDBLite consensus disorder prediction 520 541 - -
Seca8g01995 679 Gene3D DNA Cyclobutane Dipyrimidine Photolyase, subunit A, domain 3 301 502 - -
Seca8g01995 679 FunFam Deoxyribodipyrimidine photo-lyase 301 490 - -
Seca8g01995 679 NCBIfam cryptochrome photoreceptor 6 481 IPR014134 GO:0009785|GO:0009882
Seca8g01995 679 ProSitePatterns DNA photolyases class 1 signature 2. 352 371 IPR018394 -
Seca8g01995 679 PANTHER CRYPTOCHROME 6 490 IPR002081 -
Seca8g01995 679 Pfam FAD binding domain of DNA photolyase 283 480 IPR005101 -
Seca8g01995 679 Gene3D HUPs 8 206 IPR014729 -
Seca8g01995 679 PRINTS DNA photolyase signature 352 370 IPR002081 -
Seca8g01995 679 PRINTS DNA photolyase signature 332 348 IPR002081 -
Seca8g01995 679 PRINTS DNA photolyase signature 143 159 IPR002081 -
Seca8g01995 679 PRINTS DNA photolyase signature 391 405 IPR002081 -
Seca8g01995 679 Gene3D - 134 293 - -
Seca8g01995 679 Pfam DNA photolyase 7 163 IPR006050 -
Seca8g01995 679 FunFam Cryptochrome 1 8 148 - -
Seca8g01995 679 Pfam Blue/Ultraviolet sensing protein C terminal 510 624 IPR020978 -
Seca8g01995 679 SUPERFAMILY Cryptochrome/photolyase FAD-binding domain 194 488 IPR036134 -
Seca8g01995 679 ProSitePatterns DNA photolyases class 1 signature 1. 332 344 IPR018394 -
Seca8g01995 679 MobiDBLite consensus disorder prediction 611 646 - -
Seca8g01995 679 ProSiteProfiles Photolyase/cryptochrome alpha/beta domain profile. 5 134 IPR006050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g01995 Seca-Chr8 42183723 42189739 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g01995 K12118 - gmx:100786551 1278.46
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g01995 8 42183723 42189739 Seca8g01995 8 42183723 42189739 ECH
Seca8g01995 8 42183723 42189739 Seca4g02807 4 48573465 48577820 PCT