Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g02807 ATGTCAGGTGGTGGATGCAGCATAGTGTGGTTCAGAAGAGATCTGAGGGTGGAGGATAACCCTGCACTGACGGCAGGAGTGAGAGCAGGAGCTGTGGTTCCAGTTTTTATATGGGCACCTGAAGAAGAGGGTCAATACTACCCTGGCAGGGTCTCTAGGTGGTGGCTCAAGCAAAGTTTGGCTCACCTTGATTCTTCTTTGAGAAATCTTGGAACTCCTCTTATCACTAAGCGATCCACTGATAGTGTTTCTTCTCTATTAGAGGTTGTTAAGTCCACTGGAGCTACTCAACTCTTTTTTAACCAATTATATGATCCCCTGTCACTTATCAGGGATCATCGAGCAAAGGAGGTTCTGACTGCTCACGGCGTAACAGTACGTTCCTTCAACGCGGATTTATTATATGAGCCATGGGATGTCAATGATGCCAATGGCCAACCATTCACAACTTTTTCTGCTTTTTGGGAACGATGTCTTAGCATGCCTTATGATCCGGAGTCTCCTCTTCTCCCACCTAAAAGGATTATTTCAGGTCTACTTTGTTCATGTGATGTATCAAGGTGCCCTTGTGATACATTGGTGTTTGAAGATGAATCAGAGAAGGCAAGCAATGCACTTCTTGCTCGAGCATGGTCACCTGGGTGGAGCAATGCTAATAAGGCATTGACCACATTCATAAATGGCCCATTGATTGAGTACTCACAAAACCGCAGGAAGGCTGATAGTGCCACCACCTCATTTCTCTCACCCCATTTGCATTTTGGTGAGGTGAGTGTCAAAAAGGTCTTCCATCTTGTCCGCATTAAGCAAGTTTTGTGGGCCAATGAGGGAAACATTGCTGGTGAAGAAAGCGTGAACTTGTTCCTTAAGTCCATTGGTCTTAGAGAATATTCAAGGTACATTAGTTTCAACCACCCCTATAGTCATGAAAGGCCTCTTCTAGGCCACCTTAAGTTCTTTCCTTGGGTAGTAAATGAAGGCTATTTTAAGGCATGGAGACAAGGCAGGACTGGGTACCCGTTGGTAGATGCTGGCATGAGGGAGTTGTGGGCAACTGGTTGGCTGCATGATCGGATACGTGTTGTAGTTTCTAGTTTTTTTGTGAAGGTTCTGCAGCTTCCTTGGAGATGGGGAATGAAATACTTCTGGGATACCCTCTTGGATGCAGATCTTGAGAGTGATGCTCTTGGTTGGCAGTACATATCTGGTACTTTACCTGATGGTCGTGAATTTGACCGAATAGATAATCCACAGTTTGAGGGTTACAAATTTGACCCAAATGGAGAGTATGTACGACGCTGGCTTCCAGAACTTGCTAGATTACCAACTGAGTGGATACATCATCCATGGAATGCACCAGAACCGGTGCTTCAAGCTGCTGGAATAGAGCTGGGATCAAATTATCCTCTTCCAATAGTGGGAATAGATGCAGCAAAAGTCAGATTACAAGAAGCACTATTAGACATGTGGCAACAAGAAGCAGCATCAAGAGCTGCAATTGAAAATGGAACCGAGGAAGGGCTTGGAGACTCCTCTGAATCAATCCCTATTCCTTTCCCTGAAGACATACAAATGGAGGAAAGTCATGAACCTATTAGGAACAATCCTCCTCCTCCTGTTGCTCGGCGCTATCAGGACCAGATGGTTCCGAGCATGACTTCTTCCCTGGTGAGATTAGAAGAGGAAGAAACTTCTTCAGTTCTTCGAAACTCAGCAGAAGATAGCAGCAGAGCTGAAGTGCCAGTAAATGTAAATGTACAACAAAATGCAAGAGACACATTGAACGAAAGCATGTTGCAGACTGTTCATAGGAATAGACAAGTAGAATACAATACTGCTATGGAGCTGAGAAATGCAGCTGAAGATTCCATGATAGAATCTTCAAGTAGTAGCAGGAGAGAAAGGGATGGAGGCATAGTTCCAGTGTGGTCTCCACCAGCTTCCAGTTACTCAGAACAATTTGTAGGAGATGAAAATGGTATAGCAAGCAGTTCATCTTACTTGCAAAGGCATCCTCAGTCCCATGAATTGCTGAATTGGAGGCAGCTACCTCAGACCGGGTGA 2064 0.4486 MSGGGCSIVWFRRDLRVEDNPALTAGVRAGAVVPVFIWAPEEEGQYYPGRVSRWWLKQSLAHLDSSLRNLGTPLITKRSTDSVSSLLEVVKSTGATQLFFNQLYDPLSLIRDHRAKEVLTAHGVTVRSFNADLLYEPWDVNDANGQPFTTFSAFWERCLSMPYDPESPLLPPKRIISGLLCSCDVSRCPCDTLVFEDESEKASNALLARAWSPGWSNANKALTTFINGPLIEYSQNRRKADSATTSFLSPHLHFGEVSVKKVFHLVRIKQVLWANEGNIAGEESVNLFLKSIGLREYSRYISFNHPYSHERPLLGHLKFFPWVVNEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTLPDGREFDRIDNPQFEGYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPEPVLQAAGIELGSNYPLPIVGIDAAKVRLQEALLDMWQQEAASRAAIENGTEEGLGDSSESIPIPFPEDIQMEESHEPIRNNPPPPVARRYQDQMVPSMTSSLVRLEEEETSSVLRNSAEDSSRAEVPVNVNVQQNARDTLNESMLQTVHRNRQVEYNTAMELRNAAEDSMIESSSSSRRERDGGIVPVWSPPASSYSEQFVGDENGIASSSSYLQRHPQSHELLNWRQLPQTG. 688
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g02807 687 ProSitePatterns DNA photolyases class 1 signature 1. 337 349 IPR018394 -
Seca4g02807 687 Pfam DNA photolyase 7 162 IPR006050 -
Seca4g02807 687 Pfam FAD binding domain of DNA photolyase 288 485 IPR005101 -
Seca4g02807 687 ProSiteProfiles Photolyase/cryptochrome alpha/beta domain profile. 5 134 IPR006050 -
Seca4g02807 687 SUPERFAMILY Cryptochrome/photolyase, N-terminal domain 7 177 IPR036155 -
Seca4g02807 687 Pfam Blue/Ultraviolet sensing protein C terminal 516 632 IPR020978 -
Seca4g02807 687 FunFam Deoxyribodipyrimidine photo-lyase 306 495 - -
Seca4g02807 687 Gene3D DNA Cyclobutane Dipyrimidine Photolyase, subunit A, domain 3 306 507 - -
Seca4g02807 687 MobiDBLite consensus disorder prediction 621 651 - -
Seca4g02807 687 MobiDBLite consensus disorder prediction 663 687 - -
Seca4g02807 687 PANTHER CRYPTOCHROME 6 495 IPR002081 -
Seca4g02807 687 MobiDBLite consensus disorder prediction 555 579 - -
Seca4g02807 687 SUPERFAMILY Cryptochrome/photolyase FAD-binding domain 199 493 IPR036134 -
Seca4g02807 687 PRINTS DNA photolyase signature 143 159 IPR002081 -
Seca4g02807 687 PRINTS DNA photolyase signature 357 375 IPR002081 -
Seca4g02807 687 PRINTS DNA photolyase signature 396 410 IPR002081 -
Seca4g02807 687 PRINTS DNA photolyase signature 337 353 IPR002081 -
Seca4g02807 687 NCBIfam cryptochrome photoreceptor 6 486 IPR014134 GO:0009785|GO:0009882
Seca4g02807 687 Gene3D - 134 298 - -
Seca4g02807 687 Gene3D HUPs 8 211 IPR014729 -
Seca4g02807 687 ProSitePatterns DNA photolyases class 1 signature 2. 357 376 IPR018394 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g02807 Seca-Chr4 48573465 48577820 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g02807 K12118 - gmx:100797839 1247.65
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g02807 4 48573465 48577820 Seca4g02807 4 48573465 48577820 ECH
Seca8g01995 8 42183723 42189739 Seca4g02807 4 48573465 48577820 PCT