Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g01986 ATGGCCATGTTTAGGTGCTTCTCTATTTTGCCTGAAAGGAAGGTGAAAAGGAACAAGGGCAATGGAAAATCTTCAAAAAAGGACTTCAATGCTCTACTTGGGAAAATACAACAACCAAGAGTATCATCAGAGACAGGTGATTTGGAGCCAACCACTATTGATGTTACAGTACCCCATGATGTACAGAAAAATTCAAGGAGCAAGGGGAGGGTCATGAGTCTTGAGAGTCCAGTGAAGGCTGAAGTAGAGGATGCTTACGAAGGTGGTGATGAGAATGAAGATTCACCCTTGATCAATAGGGAATTCTCTGATTTTGATCTCCAAGGCCATGTAGCTGTTGCAAGCAAAGAAGGATGTGATCCAACAGATAAGGAGATGAAGTATCCTATTTTAAGTGGAAACCAAGACAACAATGAATTGGAAGACAAAAATGATATATACAGTCAAAAGAGTGCTGATATAATCCAAAGTGGACATGTCAGTGATCCTGGCATTGGCAAAGCTGATTTCTTGGCTTCTCCAAAGCTCAAGCGATCCTGCTCTAACATTGAAAAATGGGGTGTGCTTAGGCAGGTAAGTCAATACATGCCTCCTTCTAAGTCACAGTCTTTTGAGGACTTTCAGGAATTATCAGCAACTCCAATGGTTAATCTTGAGAGATCCAGGTCTATGACAAGTCACTGCAGTGCTGATAGAGTGATGTTGAAAAGGCATTCTTCAATTCAATTGCTTCCTTCTGGAAGTAAAAAATTGTGGTGGAAGTTGTTCCTGTGGAGCCATAGGAATATACATAAAACGTTCTCTAGAAAAGAAGCACTAGTTCCTGCTAGTGCTTCTTTAAATAGTCGATGCGGGTACTCTTCAGACACCCTTGAACCAAAAAAAGGCAAGGCATTGAGACATGTGGAGTCCTCTGATTCAATTACTATGGATTCTTCCTGTGACAAAAGAAGCAATTGTAAAAATATTGATAATCAAAGGCAGAGCAGATTTCACAGTGAAAATTTTGGTTTTTGGCCCCAAAACCAATGGTTTGCTTTCTCAACAGAATCATCCTCCTTTGCCAGAGTGGATGCATGGGTGAAAGATCTTGAAATTAATCAACCACTTCCTGAGGATGATTTTGATGATGACAATGCCAGAAGCATTGTCTTCCCACCTTCTCCTGATGATGGTAGATCAATGACAAGAAGCACAGCGCCGTTAACTCATCCAGATGCCAGCCTCTCAAAGGAGATATTGAATGCCAACAGTGTGGTTCAGTCTCTAAATCCAGCTTCATCTGTTGCTCACATATCCGGTGTTGGTATAAAAGCCATCCCCGTTATTTCACACTTCTCCAATCTCCGGTCTGTTAATTTGTCAAGCAATTTCATAGTTCACATCTCGCCAGGATTTCTACCAAAGGGTATTCAAACACTTAATTTGTCAAGAAACAAGATCAGCACCCTTGAGGGCCTTAGAGAATTGACCCGGTTGCGGGTACTTGACCTAAGCTACAACCGCATCTCAAGAATTGGACAAGGGTTGTCAAGTTGTACACTTATCAAAGAGCTATATCTTGCTGGGAACAAGATAAGTCATGTTGAGGGGCTACACAGACTATTTAAGCTCACAGTTCTAGACTTGAGCTTCAACAAGATCACAACAACAAAAGCATTAGGCCAACTAGTGGCTAACTACAACTCACTTCAGGCCCTTGATCTACTTGGAAATCCCATTCAAAGTAACATCAGTGATGACCAGCTAAGCAAAGCAGTCTGTGGTCTCCTTCCAAAGCTGGTGTTCCTGAACAAGCAACCCCTCAAGGCTCACAGGGCACGGGAAATTCTCACTGATAGCGTTGCCAGAGCTGCACTTGGGAACAGCAAGCGGGGCTCCAGCAGGAGATCACTAAAGAAAGTTGGCCAAGGAGGATCAGGTTCCACCAGAGGGAATAGAAGCAGTGCAAGTGTCACCCAGAAAAGCAGGAACAGGACAAGGAGGTGA 1989 0.4289 MAMFRCFSILPERKVKRNKGNGKSSKKDFNALLGKIQQPRVSSETGDLEPTTIDVTVPHDVQKNSRSKGRVMSLESPVKAEVEDAYEGGDENEDSPLINREFSDFDLQGHVAVASKEGCDPTDKEMKYPILSGNQDNNELEDKNDIYSQKSADIIQSGHVSDPGIGKADFLASPKLKRSCSNIEKWGVLRQVSQYMPPSKSQSFEDFQELSATPMVNLERSRSMTSHCSADRVMLKRHSSIQLLPSGSKKLWWKLFLWSHRNIHKTFSRKEALVPASASLNSRCGYSSDTLEPKKGKALRHVESSDSITMDSSCDKRSNCKNIDNQRQSRFHSENFGFWPQNQWFAFSTESSSFARVDAWVKDLEINQPLPEDDFDDDNARSIVFPPSPDDGRSMTRSTAPLTHPDASLSKEILNANSVVQSLNPASSVAHISGVGIKAIPVISHFSNLRSVNLSSNFIVHISPGFLPKGIQTLNLSRNKISTLEGLRELTRLRVLDLSYNRISRIGQGLSSCTLIKELYLAGNKISHVEGLHRLFKLTVLDLSFNKITTTKALGQLVANYNSLQALDLLGNPIQSNISDDQLSKAVCGLLPKLVFLNKQPLKAHRAREILTDSVARAALGNSKRGSSRRSLKKVGQGGSGSTRGNRSSASVTQKSRNRTRR. 663
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g01986 662 ProSiteProfiles Leucine-rich repeat profile. 537 558 IPR001611 GO:0005515
Seca8g01986 662 SMART LRR_sd22_2 490 512 - -
Seca8g01986 662 SMART LRR_sd22_2 535 556 - -
Seca8g01986 662 SMART LRR_sd22_2 468 489 - -
Seca8g01986 662 SMART LRR_sd22_2 513 534 - -
Seca8g01986 662 ProSiteProfiles Leucine-rich repeat profile. 515 536 IPR001611 GO:0005515
Seca8g01986 662 PANTHER NISCHARIN RELATED 211 657 - -
Seca8g01986 662 SMART LRR_typ_2 490 513 IPR003591 -
Seca8g01986 662 SMART LRR_typ_2 535 557 IPR003591 -
Seca8g01986 662 SMART LRR_typ_2 446 468 IPR003591 -
Seca8g01986 662 MobiDBLite consensus disorder prediction 633 655 - -
Seca8g01986 662 ProSiteProfiles Leucine-rich repeat profile. 492 514 IPR001611 GO:0005515
Seca8g01986 662 FunFam Outer arm dynein light chain 1 protein 509 607 - -
Seca8g01986 662 SUPERFAMILY Outer arm dynein light chain 1 437 600 - -
Seca8g01986 662 Gene3D Ribonuclease Inhibitor 396 511 IPR032675 -
Seca8g01986 662 Gene3D Ribonuclease Inhibitor 512 607 IPR032675 -
Seca8g01986 662 FunFam Outer arm dynein light chain 1 protein 395 508 - -
Seca8g01986 662 MobiDBLite consensus disorder prediction 385 404 - -
Seca8g01986 662 Pfam Leucine rich repeat 447 503 IPR001611 GO:0005515
Seca8g01986 662 MobiDBLite consensus disorder prediction 621 662 - -
Seca8g01986 662 ProSiteProfiles Leucine-rich repeat profile. 470 491 IPR001611 GO:0005515
Seca8g01986 662 Pfam Leucine Rich repeat 537 549 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g01986 Seca-Chr8 42027543 42031084 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g01986 441 602 Receptor kinase-like Gene Family AT5G56040 33.889 2.64e-07 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g01986 - - gmx:100813969 855.899
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g01986 8 42027543 42031084 Seca8g01986 8 42027543 42031084 ECH
Seca8g01986 8 42027543 42031084 Seca4g02818 4 48729740 48733585 PCT