Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g02818 ATGGCCATGTGCAGGTGTGTAGAGGTTTTGATTGGAAGGAAGGAGAAAAACCAGGGTACTGAACGATCAACAAACGGAGGTGTGAAAACTCTACTAACAAAAGTACAGCACCCAAGGATATCATCAGAGAGTCATGATTTGAAGCCAGCCGTGCTTGATGTTACAGTACCCTGTGGTATCCAGAAGAATTCAAGGTGCAATGTGAGGGTTATGAATCTTGAGAGTCCTATGAAGACTGAAGCAGAGGAAGCTTATGAAGGGGAAGATGAGCATGAAGATTCACCCTCCATCAAGAGGGAGCTCTCTGATTTTGATCTCCAAGCCCATGAAGCTGTTGCAAGCGAAGGAGGATATGATCCAGCAGATAAAGAGATCAAACATCCCAGTTTATATGAAAACCAAGCCAACATTCAATTGGAAGACAGGTACAATAAATACAGCAAAAATAGTGTTGATATAATCCAAAGTGGACATGTCAGTGATCCTGGGATTGGCAAGGCTGACTTCTGGGCTTCTCCAAAGCTTGAACGATCTTGCTCTAACCTGGAAAGAAGGGATGTGCTTAGGAAGACGCCCCATCACTTTCCATCTTCAAAGTCACAGTCTTTTGAGGATTCGCAGGAATTATCAGCAAATCAGATGGTTAATCTAGCAAGTCCCAGGTCTGTGATGACTCAATGCAGTGCTGATAGAGTGATGCTGAGAAGGCATTCATCAAGTCAAGTCCTCCCTTCTGGAAGTAAAAGGTTGTGGTGGAAGTTGTTCCTCTGGAGCCACAGGAACATACATAAACCTGGGATAAGCAAATCAACACAATTACATCCTGCAAAAGCTGCTTTAAATAATAAATGCGGGTACTCTTCAGACACCCTTGAACCAAAACAAGGTAAGGCAATGAGACTTGTGGAATCACCCTCACCCATGTCATCTTCTGGGGAGTACTTTGACAAAAGCTGCAATGATAAAAATACTGATAACCAAAGGTGGAGCAGATTTCACAAAGAAAGCTTTGGTTTCTGGACACAAAACCAATGGGTAGCTTTCTCAACAGAATCATCCTCCTTTAACAGAGTGGATGAGTGGGTGAAAGATCTTGAAGTTCAGCAGCCACCTCCTGAGGATGATTTTGGTGATGACAATATTGGAAGCATTGTGTTCCCACCTTCTCCTGACGCTGGCAGATCAATGGCAAGAAGCACAGCTCAGTTAGTTCGACATCAAGATGCCAATCTTTCAAAGGAGATTTTGAATGCCAATAGCGTGGTCCAGTCTCTGAATCCAGCCTCAACTGCAGCTCATATATCGGGTATTGGTATAAAAGCCATCCCCGCCCTTTCACACTTCTCTAGCCTTCGCTCTGTCAATTTGTCAAACAATTTCATAGTTCACATCACGCCTGGATTTCTCCCAAAGGGTATTCATACACTTAATTTGTCAAGAAACAAGATCAGCACCATTGAGGGCCTCAGAGAATTAACCCGGTTGCGGGTACTAGACCTAAGTTATAATCGCATCTCAAGAATAGGACAAGGGCTATCAAATTGTACACTAGTCAAAGAGCTATATCTTGCGGGAAACAAGATAAGCGATGTTGAAGGGCTACACAGGTTATTGAAGCTAACAGTTCTGGACTTGAGCTTTAACAAGATCACAACAACAAAAGCATTAGGCCAGCTTGTAGCTAACTACAACTCACTTCAGGCCTTGAATCTGCTCGGAAATCCAATTCAAAGCAACATCAGTGATGACCAGCTACGTAAAGCAGTTTGTGGCCTTCTACCAAAGCTTGTGTACCTGAACAAGCAATCTATCAAGCCTCAAAGAGCACGAGAAATACTCACTGATAGTGTTGCCAAAGCTGCACTTGGGAACAGCAGCCGGAGCTCCTACAGAAGAGCACTAAAGAAAGGTGGCCAAGGAGGATCAAGTTCCTCTAGTGTGTGTAGAAGCAGTGCTAGTGTTGCCCAGAAGAGCAAGAACAGATCAAGGAGCCGAACTAAACATCATTAA 2010 0.4373 MAMCRCVEVLIGRKEKNQGTERSTNGGVKTLLTKVQHPRISSESHDLKPAVLDVTVPCGIQKNSRCNVRVMNLESPMKTEAEEAYEGEDEHEDSPSIKRELSDFDLQAHEAVASEGGYDPADKEIKHPSLYENQANIQLEDRYNKYSKNSVDIIQSGHVSDPGIGKADFWASPKLERSCSNLERRDVLRKTPHHFPSSKSQSFEDSQELSANQMVNLASPRSVMTQCSADRVMLRRHSSSQVLPSGSKRLWWKLFLWSHRNIHKPGISKSTQLHPAKAALNNKCGYSSDTLEPKQGKAMRLVESPSPMSSSGEYFDKSCNDKNTDNQRWSRFHKESFGFWTQNQWVAFSTESSSFNRVDEWVKDLEVQQPPPEDDFGDDNIGSIVFPPSPDAGRSMARSTAQLVRHQDANLSKEILNANSVVQSLNPASTAAHISGIGIKAIPALSHFSSLRSVNLSNNFIVHITPGFLPKGIHTLNLSRNKISTIEGLRELTRLRVLDLSYNRISRIGQGLSNCTLVKELYLAGNKISDVEGLHRLLKLTVLDLSFNKITTTKALGQLVANYNSLQALNLLGNPIQSNISDDQLRKAVCGLLPKLVYLNKQSIKPQRAREILTDSVAKAALGNSSRSSYRRALKKGGQGGSSSSSVCRSSASVAQKSKNRSRSRTKHH. 670
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g02818 669 ProSiteProfiles Leucine-rich repeat profile. 472 493 IPR001611 GO:0005515
Seca4g02818 669 SMART LRR_typ_2 537 559 IPR003591 -
Seca4g02818 669 SMART LRR_typ_2 448 470 IPR003591 -
Seca4g02818 669 SMART LRR_typ_2 492 515 IPR003591 -
Seca4g02818 669 PANTHER NISCHARIN RELATED 196 651 - -
Seca4g02818 669 ProSiteProfiles Leucine-rich repeat profile. 517 538 IPR001611 GO:0005515
Seca4g02818 669 Gene3D Ribonuclease Inhibitor 513 610 IPR032675 -
Seca4g02818 669 Gene3D Ribonuclease Inhibitor 410 512 IPR032675 -
Seca4g02818 669 SMART LRR_sd22_2 515 536 - -
Seca4g02818 669 SMART LRR_sd22_2 537 558 - -
Seca4g02818 669 SMART LRR_sd22_2 470 491 - -
Seca4g02818 669 SMART LRR_sd22_2 492 514 - -
Seca4g02818 669 ProSiteProfiles Leucine-rich repeat profile. 494 516 IPR001611 GO:0005515
Seca4g02818 669 Pfam Leucine Rich repeat 539 551 IPR001611 GO:0005515
Seca4g02818 669 ProSiteProfiles Leucine-rich repeat profile. 539 560 IPR001611 GO:0005515
Seca4g02818 669 MobiDBLite consensus disorder prediction 624 659 - -
Seca4g02818 669 MobiDBLite consensus disorder prediction 624 669 - -
Seca4g02818 669 MobiDBLite consensus disorder prediction 295 316 - -
Seca4g02818 669 FunFam Outer arm dynein light chain 1 protein 511 609 - -
Seca4g02818 669 FunFam Outer arm dynein light chain 1 protein 397 510 - -
Seca4g02818 669 Pfam Leucine rich repeat 450 505 IPR001611 GO:0005515
Seca4g02818 669 SUPERFAMILY Outer arm dynein light chain 1 439 605 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g02818 Seca-Chr4 48729740 48733585 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g02818 497 624 Receptor kinase-like Gene Family AT5G07280 35.115 6.79e-06 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g02818 - - gmx:100813969 1058.13
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g02818 4 48729740 48733585 Seca4g02818 4 48729740 48733585 ECH
Seca8g01986 8 42027543 42031084 Seca4g02818 4 48729740 48733585 PCT