Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g01949 ATGGCTCTCTCCTCCTCCGCTAACTCTCTCATTCCCACCAAATCCTTAATCCCTCAAACCCACTCCCTCATCCCTTCCACCAAACTCAACCAAACCTCATTCCCCACCCTTTCCAGGCCCAAGCCCGGGCCCACTCCTTCCATTCTCGCCGTCCACGCAGCCGAGCCCGCCAAGAACCCGGTGGTCTCCGACAAGCCCCCGAAACCTCAACCTACAGCCCCTCCCCGAAATGCTGGGCTTGGAAAGTGGGCCCTGGACAGCTGGAAATCAAAAAAGGCCCTTCAGCTGCCTGAATACCCTAACCAGGAGGACCTTGAATCGGTGCTCAAGACGCTCGACGCGTTCCCACCAATCGTGTTCGCCGGTGAGGCCAGAACCCTGGAAGAGCGTCTCGGAGAAGCTGCTTTAGGAAATGCCTTCCTTCTTCAAGGTGGTGACTGCGCCGAGAGCTTCAAAGAGTTCAATGCGAACAACATCCGTGACACCTTCCGTATCATCCTCCAGATGAGCGTCGTCATGATGTTCGGTGGCCAAATGCCAGTCATCAAGGTTGGGAGAATGGCGGGTCAATTTGCGAAGCCGAGATCGGATTCGTTTGAGGAGAAGAACGGTGTGAAGCTTCCGAGTTACAGAGGGGATAACATCAACGGAGATTCGTTTGATGAGAAATCAAGGATTCCAGATCCGCAGAGAATGATTAGAGCTTATTGTCAAGCAGCTGCTACTCTCAATCTTCTGAGAGCTTTTGCCACTGGAGGTTATGCTGCTATGCAGAGGGTTACTCAATGGAATTTGGACTTCACAGAGCATAGCGAACAAGGAGACAGGTACCGAGAGCTTGCTAACCGAGTTGATGAGGCACTTGGATTCATGGCTGCTGCTGGACTCACAGTTGACCATCCCATAATGAAAACAACTGAATTCTGGACATCTCATGAATGCTTGTTATTGCCATATGAACAATCCCTCACTAGGTTGGATTCAACATCTGGTCTCTACTATGACTGCTCAGCCCATATGCTTTGGGTTGGGGAAAGGACCAGGCAGCTGGATGGTGCCCATGTTGAGTTTCTAAGAGGAGTTGCTAATCCCTTGGGAATTAAGGTAAGTGACAAGATGGATCCAAATGAGCTTGTTAAACTCATCGAGATCTTGAATCCCCAAAACAAACCAGGGAGAATAACTGTGATCACCAGAATGGGAGCTGAAAATATGAGAGTGAAGCTTCCACATCTAATCAGGGCAGTGCGCAGAGCAGGGCAAATTGTCACTTGGGTCAGCGATCCTATGCATGGAAACACCATCAAGGCTCCATGTGGTCTTAAAACTCGCCCCTTTGATGCCATCAGGGCTGAAGTGAGGGCATTCTTTGATGTGCACGATCAAGAAGGAAGCCACCCAGGTGGAGTTCATCTAGAGATGACAGGTCAAAATGTGACCGAATGCATTGGTGGGTCAAGGACAGTCACATTTGATGACTTGAGCTCACGTTACCACACACACTGTGACCCTAGGCTGAATGCTTCACAATCTCTTGAGCTTGCTTTCATCATTGCTGAACGGCTAAGAAAGAGTAGGATCAGAACACAGAAGCCTCTTGCACCTATGGGACTGTGA 1617 0.5009 MALSSSANSLIPTKSLIPQTHSLIPSTKLNQTSFPTLSRPKPGPTPSILAVHAAEPAKNPVVSDKPPKPQPTAPPRNAGLGKWALDSWKSKKALQLPEYPNQEDLESVLKTLDAFPPIVFAGEARTLEERLGEAALGNAFLLQGGDCAESFKEFNANNIRDTFRIILQMSVVMMFGGQMPVIKVGRMAGQFAKPRSDSFEEKNGVKLPSYRGDNINGDSFDEKSRIPDPQRMIRAYCQAAATLNLLRAFATGGYAAMQRVTQWNLDFTEHSEQGDRYRELANRVDEALGFMAAAGLTVDHPIMKTTEFWTSHECLLLPYEQSLTRLDSTSGLYYDCSAHMLWVGERTRQLDGAHVEFLRGVANPLGIKVSDKMDPNELVKLIEILNPQNKPGRITVITRMGAENMRVKLPHLIRAVRRAGQIVTWVSDPMHGNTIKAPCGLKTRPFDAIRAEVRAFFDVHDQEGSHPGGVHLEMTGQNVTECIGGSRTVTFDDLSSRYHTHCDPRLNASQSLELAFIIAERLRKSRIRTQKPLAPMGL. 539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g01949 538 SUPERFAMILY Aldolase 80 523 - -
Seca8g01949 538 Pfam Class-II DAHP synthetase family 83 519 IPR002480 GO:0003849|GO:0009073
Seca8g01949 538 PANTHER PHOSPHO-2-DEHYDRO-3-DEOXYHEPTONATE ALDOLASE 1, 2 47 531 IPR002480 GO:0003849|GO:0009073
Seca8g01949 538 MobiDBLite consensus disorder prediction 22 80 - -
Seca8g01949 538 NCBIfam 3-deoxy-7-phosphoheptulonate synthase class II 83 525 IPR002480 GO:0003849|GO:0009073
Seca8g01949 538 MobiDBLite consensus disorder prediction 22 38 - -
Seca8g01949 538 FunFam Phospho-2-dehydro-3-deoxyheptonate aldolase 272 524 - -
Seca8g01949 538 Gene3D Aldolase class I 266 524 IPR013785 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g01949 Seca-Chr8 40841237 40845557 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g01949 K01626 - gmx:100797019 988.793
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g01949 8 40841237 40845557 Seca8g01949 8 40841237 40845557 ECH
Seca8g01949 8 40841237 40845557 Seca4g02833 4 49030647 49035006 PCT